EY702490

Overview
NameEY702490
Unique NameEY702490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5225 contig Csv1_Contig5225:230..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 55/67 (82.09%), Postives = 64/67 (95.52%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 278
            G LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE
Sbjct:  488 GALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554          
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.941e-28
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 281
            G+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR  +NGRKFGGNQVVAVFYPENKF +GDY+G
Sbjct:  506 GSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573          
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.941e-28
Identity = 54/67 (80.60%), Postives = 65/67 (97.01%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 278
            G LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE
Sbjct:  522 GNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588          
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.677e-25
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 275
            G L NV+IPRP+PNGEP  G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY
Sbjct:  506 GALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571          
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.721e-25
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 278
            G LV V+IPRP+P+GEP  GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA  DY+
Sbjct:  474 GNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540          
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 278
            G L+ V+IPRP+P+G P  GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+  +Y+
Sbjct:  481 GNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547          
BLAST of EY702490 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3
Query:   78 GTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 281
            G LV V+IPRP+P+G P  GVG+VFLE+AD++ +TKA+ GM+GRKF  NQVVAVFYPE+KFA+G Y+G
Sbjct:  507 GNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574          
The following BLAST results are available for this feature:
BLAST of EY702490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
U2A2A_NICPL9.955e-2982.09Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_NICPL4.941e-2879.41Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2B_ARATH4.941e-2880.60Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2A_ARATH6.677e-2575.76Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_WHEAT8.721e-2576.12Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2B_ORYSJ1.645e-2371.64Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_ORYSJ4.051e-2266.18Splicing factor U2af large subunit A OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-F01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702490 ID=EY702490; Name=EY702490; organism=Citrus sinensis; type=EST; length=563bp
GCACCCACGCGTCCGTTCGTTTTTTCTAACATTGTTGAAGTTTTTGTCTA
TTCCAAAATTTTCACACGTGGTATGCAGGTACATTGGTGAATGTTATCAT
CCCGCGCCCAAATCCCAATGGCGAGCCATCACCAGGAGTTGGGAAGGTGT
TCTTAGAATATGCAGATATTGATGGTGCTACAAAAGCTCGAACAGGGATG
AACGGAAGAAAATTTGGTGGAAATCAAGTTGTTGCTGTATTTTATCCAGA
GAACAAATTTGCCCAGGGGGATTATGAAGGCTAATAGTTGTTTTTCTAGC
ATTACTTGTGGAATTCTCTCCCCTGATGTTCTATCAAATAGATCTAGCTT
TAGGGTACAGTGATGTTCTCGAGGAGAGCTTGCAGTGTTGGGTTTTTAGT
TCTTAATTAATTCTTTTTTCTCAGAGGTCATAATGAATATAATTCTGTTT
CCGAACTATAATGGATGACCCTGTTCTATAATCTATTGGTGTGCAAATAC
AATTTTGTTGGAAGATTTCTGCATTAGTTGTAATTTAAAATCAGCAAAAA
AAAAAAAAAAAGG
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