EY702489

Overview
NameEY702489
Unique NameEY702489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702489_ssr159 microsatellite EY702489_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.240e-33
Identity = 58/122 (47.54%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV ELIY+ G       R  L  DNS+I  +LG+ GII ME+ + EI T      E N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  143 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL-TDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 263          

HSP 2 Score: 63.1586 bits (152), Expect = 6.240e-33
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGING  P+
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPK 126          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.250e-33
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV ELIY+ G       R  L  DN++I  +LG++GII ME+ + EI T      E N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  120 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL-TDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 240          

HSP 2 Score: 63.1586 bits (152), Expect = 6.250e-33
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGING  P+
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPK 103          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.250e-33
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV ELIY+ G       R  L  DN++I  +LG++GII ME+ + EI T      E N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  120 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL-TDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 240          

HSP 2 Score: 63.1586 bits (152), Expect = 6.250e-33
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGING  P+
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPK 103          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.250e-33
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV ELIY+ G       R  L  DN++I  +LG++GII ME+ + EI T      E N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  121 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL-TDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 241          

HSP 2 Score: 63.1586 bits (152), Expect = 6.250e-33
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGING  P+
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPK 104          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.250e-33
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV ELIY+ G       R  L  DN++I  +LG++GII ME+ + EI T      E N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  121 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL-TDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 241          

HSP 2 Score: 63.1586 bits (152), Expect = 6.250e-33
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGING  P+
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPK 104          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.132e-33
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV ELIY+ G       R  L  DNS++  +LG+ GII ME+ + EI T      E N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  133 TFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIAL-TDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN 253          

HSP 2 Score: 63.1586 bits (152), Expect = 8.132e-33
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGING  P+
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPK 116          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.049e-32
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  348 AERPRKFCSFSV*DRFLMVSF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLG--GLKNKRNPYG*GGDAGNREEYPN 770
            A +PRK        +     F + TK  +  L  VEPY+ +GYPNL SVR+L+Y+ G       R  L  DN+IIE ALG++GII ME+ + EI T  P   + ++FLWPF+   P G  G++ K   Y  GG  GNREE  N
Sbjct:  102 APKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPL-SDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENIN 243          

HSP 2 Score: 67.3958 bits (163), Expect = 3.049e-32
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  184 KLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPRDQE 363
            K+I++R ++Y KEY E ++E IRL+REAKL G FYV  E KL+F+IRI+GI+   P+ ++
Sbjct:   48 KVIFSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRK 107          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.142e-31
Identity = 62/143 (43.36%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  354 RPRKFCSFSV*DRFLMVS---F*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKR-NPYG*GGDAGNREEYPN 770
            +PRK        R L ++   F + TK  +  +  VEP+V YGYPNLKSV+ELIY+ G       R  L  DNSIIE  LG++GII ME+ + EI T  P   + ++FLWPF+   P GG + ++   +  GGD GNREE+ N
Sbjct:  103 KPRKILQLL---RLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVAL-TDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHIN 241          

HSP 2 Score: 60.8474 bits (146), Expect = 1.142e-31
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPRDQE 363
            R +I+ R + Y KEY + ++E IRL+R AK  G F++  EAKL+F+IRI+GIN   P+ ++
Sbjct:   46 RAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRK 106          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.449e-31
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  405 SF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            +F K  K     L  VEPY+ +GYPNLKSV +LIY+ G       R  L  DNS+I   LG+ GII ME+ + EI T        N+FLWPF+  +P GG+K K   +  GGDAGNRE+  N
Sbjct:  119 TFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIAL-TDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGDAGNREDQIN 239          

HSP 2 Score: 62.3882 bits (150), Expect = 9.449e-31
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RK+IY R K Y KEY    ++ IR+ R A+  G +YV  E KL F+IRIRGING  P+
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPK 102          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.805e-30
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  396 LMVSF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKR-NPYG*GGDAGNREEYPN 770
            + V F K TK     L  VEPYVTYG PNLK+VREL+Y+ G       R  L  DN+IIE ALG++ I+ +E+ + EI T  P   +  +F+WPFQ  +PLGG ++++   +  GGDAG R+E+ N
Sbjct:  123 VFVKFNKATKE---MLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIAL-SDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHIN 244          

HSP 2 Score: 56.9954 bits (136), Expect = 7.805e-30
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            R+LI  R + Y  EY + ++E I L R+A+ +G +YV  E KL+F+IRIRGIN   P+
Sbjct:   49 RELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPK 106          
The following BLAST results are available for this feature:
BLAST of EY702489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL7_MOUSE6.240e-3347.5460S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_PONAB6.250e-3346.7260S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MACFA6.250e-3346.7260S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN6.250e-3346.7260S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN6.250e-3346.7260S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT8.132e-3346.7260S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_YARLI3.049e-3241.9660S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_NEUCR1.142e-3143.3660S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_CHICK9.449e-3145.9060S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7C_SCHPO7.805e-3045.2460S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702489 ID=EY702489; Name=EY702489; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGGGCTCCGTGAAGAAGAAGATCTAAAAGACCTCTAAGAAC
AAAAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAGTGTTGA
AGAACAAAAAGACAGAGGAGGAATGGGGAGGGGGCAAGAAGCAGGAGCTG
GAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTACAACAG
AACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAACTCATTC
GTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAACCCAGAA
GCTAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGGTGGTGAGCC
GAGAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTTTTAAT
GGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGGCTGCACAGAG
TTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAA
CTGATTTACCAAGAGGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCT
TTGACCCGACAATTCTATCATTGAACCGGCTCTTGGGCAGCATGGAATTA
TCCGCATGGAAAATCCCCTCCCTGAGATTTTGACTGGTTGGCCCCCACTT
TCGGAGGGAAACCACTTCCTATGGCCCTTCCAGCCTCAGGCACCCTTGGG
GGGCCTGAAGAACAAGAGGAACCCCTATGGTTAAGGGGGTGATGCCGGAA
ACCGGGAAGAATACCCCAATGGACCCCCTCAAAGGGCGGACTACGCCTCC
TGCGAATACCCTCCCCCTTTTGAAAAATTTTGAGGGACCACCATCCTAAC
TTTGCCTCTTGGGGGTTCTATTCCCCCACCTTTCCCC
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