EY702487

Overview
NameEY702487
Unique NameEY702487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702487_ssr674 microsatellite EY702487_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1531 contig Csv1_Contig1531:15..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: T112A_ARATH (TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.045e-33
Identity = 72/124 (58.06%), Postives = 84/124 (67.74%), Query Frame = 3
Query:   60 MRLLTHNMLSSNIKGVANGFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDEV 428
            MRL+THNMLS NIKGV +GFPL +E   VIEK+VDFNPDF++++F KIEW+ALV+ +RSMGYA                 FL+K               VCPETGRKFPVNKGIPNMLLHEDEV
Sbjct:    1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV 124          
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: T112B_ARATH (TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.169e-30
Identity = 69/124 (55.65%), Postives = 78/124 (62.90%), Query Frame = 3
Query:   60 MRLLTHNMLSSNIKGVANGFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDEV 428
            MRL+ HNMLS NIKGV N FPL +E EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM Y                  FLRKF              VCPETGRKF V+KGIPNMLLHEDEV
Sbjct:    1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLHEDEV 124          
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: TR112_MOUSE (tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 3
Query:   60 MRLLTHNMLSSNIKGVAN-GFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDE 425
            M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ ++  A                FLRK                CPE+GR FP+++GIPNMLL+++E
Sbjct:    1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADTLNLA-EVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLNDEE 122          
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: TR112_BOVIN (tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   60 MRLLTHNMLSSNIKGVA-NGFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDE 425
            MRLLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW AL++A+  + +                 FLRK                CPE+GR FP+++GIPNMLL ++E
Sbjct:    1 MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADHL-HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIPNMLLSDEE 122          
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: TR112_HUMAN (tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3
Query:   60 MRLLTHNMLSSNIKGVAN-GFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDE 425
            M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ ++                   FLR                 CPE+GR FP+++GIPNMLL E+E
Sbjct:    1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNLRLIQVPKGPVEGYEENEE-FLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSEEE 122          
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: TR112_DROME (TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 3
Query:   60 MRLLTHNMLSS-NIKGVANGFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDEV 428
            M+L T+N L+S  IKGV  GFPL + + K    + +FNP F++ I PK++W A+  A++                      L+K                CPETGR FP++ GIPNMLL+EDEV
Sbjct:    1 MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLECPETGRVFPISDGIPNMLLNEDEV 124          
BLAST of EY702487 vs. ExPASy Swiss-Prot
Match: TR112_DICDI (TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 3
Query:   60 MRLLTHNMLSSNIKG-VANGFPLLVEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIPNMLLHEDEV 428
            M++LTHNM++   K  +  GFPL VE  + I  + +FN +F KNI+PK++W  +  A  S+ +                 FL+                 CP   R +P++KGIPNMLL EDE+
Sbjct:    1 MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQEFNYEFTKNIYPKLDWLGI--AEISIKFNIPIQLDTTKHSLEDEEFLKTLHNLLCNLKVITGSLTCPNCQRVYPIDKGIPNMLLREDEI 122          
The following BLAST results are available for this feature:
BLAST of EY702487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
T112A_ARATH3.045e-3358.06TRM112-like protein At1g22270 OS=Arabidopsis thali... [more]
T112B_ARATH9.169e-3055.65TRM112-like protein At1g78190 OS=Arabidopsis thali... [more]
TR112_MOUSE3.269e-1940.65tRNA methyltransferase 112 homolog OS=Mus musculus... [more]
TR112_BOVIN1.622e-1839.84tRNA methyltransferase 112 homolog OS=Bos taurus G... [more]
TR112_HUMAN1.518e-1637.40tRNA methyltransferase 112 homolog OS=Homo sapiens... [more]
TR112_DROME6.379e-1537.10TRM112-like protein OS=Drosophila melanogaster GN=... [more]
TR112_DICDI1.018e-1233.87TRM112-like protein OS=Dictyostelium discoideum GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702487 ID=EY702487; Name=EY702487; organism=Citrus sinensis; type=EST; length=754bp
GCCATATGAAGTATTGGCAGGCGCTCACAGGGACAGCGAGGGGTTAGAGA
AAAAGGAAGATGAGGCTACTAACACACAACATGTTATCATCTAACATCAA
GGGAGTCGCCAACGGCTTCCCTCTCCTGGTCGAGGTGGAGAAAGTCATCG
AAAAGCAGGTGGATTTCAACCCCGATTTTCTAAAAAATATATTCCCGAAG
ATCGAGTGGCAGGCGCTTGTCCAGGCGTCGCGGTCCATGGGCTACGCTGA
GCTCCCCGAGGAGTCGCCCGAATCGTCGATGCTTGACTCGGACGATTTTT
TGAGGAAGTTCCACCATGCGCTCCTGGAGCTGCATCTGGAAGAGGGTGCT
CTGGTTTGTCCTGAGACAGGGAGAAAGTTTCCGGTTAATAAGGGGATTCC
TAATATGCTGCTCCATGAAGATGAGGTCTGATTTTGTTGGGTTTTCTGTT
TATTGCAGTTGAGAATTAGGGTTAGGGTTTTGGGTTTTACTGAATAGAAG
AAACTGTTTGTTTGATTGTGATAATGACCATGTGATGCTTTCTCAATTAT
GAAATGCAATGAGCGGTTTTAATTTGATGAAAAAAAAAAACACCACAAAA
AAAACACCCACACACCCACCCCACACCCTCCCCACCTCCCCCCCCCCACA
CCCCCCCCCCCCCCCGCCGCCNNCGCCGCCGCCGCGGCGCCTCGCCCCCC
CCCCTTCTCCCTCCTCTCTTCCCGCCCTCTAACCCGTGGGGCGCGCGTCC
TAAA
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