EY702481

Overview
NameEY702481
Unique NameEY702481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.299e-34
Identity = 95/213 (44.60%), Postives = 123/213 (57.75%), Query Frame = 2
Query:  293 MAETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            M+ T  A+ TDLP+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V+VFQS+  G+ L   G   L        Q+             +KV V            ++      ++   E+DKM VDV+KQ+FP     G  + RV L +G+GVA L+  + GT DAV+ D
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLV-IGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFP-NVAVGYEDPRVNLIIGDGVAFLKNAAEGTYDAVIVD 205          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.588e-32
Identity = 93/204 (45.59%), Postives = 117/204 (57.35%), Query Frame = 2
Query:  320 TDLPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            T+LP+KRPR++  E E   ANN+NNG      +  +    ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSS  G+ L   G   L        Q+          P  +KV V            +S      ++   E+DKM V+V+KQFFP     G  + RV L +G+GVA L+    GT DAV+ D
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQFFP-DVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVD 208          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.588e-32
Identity = 91/201 (45.27%), Postives = 115/201 (57.21%), Query Frame = 2
Query:  317 ATDLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+VMVFQS+  G+ L   G   L        Q+          P  +KV V            ++      ++   E+DKM VDVSK++FP     G  + RVTL +G+GVA L+A   GT DAV+ D
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEYFPDIA-VGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVD 200          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.620e-32
Identity = 90/205 (43.90%), Postives = 118/205 (57.56%), Query Frame = 2
Query:  314 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            +ATDL  KRPR++      ++N G+  ME    D  K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDYQ+V+VFQS+  G+ L   G   L        Q+          P  +KV V            ++      ++   E+DKM VDVSKQFFP     G  + RV L +G+GVA L+  + G+ DAV+ D
Sbjct:    7 SATDL--KRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFP-DVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD 201          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.713e-31
Identity = 83/167 (49.70%), Postives = 99/167 (59.28%), Query Frame = 2
Query:  419 PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            PD +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSS  G+ L   G   L        Q+          P+ +KV V            ++      ++   E+DKM VDVSKQFFP     G  + RV L +G+GVA L+A   GT DA++ D
Sbjct:   17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPSPKKVLV-IGGGDGGVLREVARHLSVEQIDICEIDKMVVDVSKQFFP-DVAVGFEDPRVVLHIGDGVAFLKAVPEGTYDAIIVD 181          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.713e-31
Identity = 90/207 (43.48%), Postives = 118/207 (57.00%), Query Frame = 2
Query:  308 SAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+YQ VMVFQSS  G+ L   G   L        Q+          P  +KV V            ++      ++   E+D M V+VSKQFFP     G  + RVTL++G+GVA L+A   GT DAV+ D
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFP-EVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVD 208          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.713e-31
Identity = 85/184 (46.20%), Postives = 106/184 (57.61%), Query Frame = 2
Query:  368 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            NNNNNG       ++K+  CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQ+VMVFQS+  G+ L   G   L        Q+          P  +KV V            +S      ++   E+DKM V+V+KQFFP     G  + RV L +G+GVA L+    GT DAV+ D
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQFFP-DVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVD 183          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.535e-30
Identity = 88/185 (47.57%), Postives = 107/185 (57.84%), Query Frame = 2
Query:  365 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            AN+NNNG       +N+ P  ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSS  G+ L   G   L        Q+          P  +KV V            +S      ++   E+DKM V+VSKQFFP     G  + RV L +G+GVA L+  + GT DAV+ D
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVSKQFFP-DVAVGYEDPRVNLHIGDGVAFLKNVAAGTYDAVIVD 179          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.535e-30
Identity = 83/175 (47.43%), Postives = 102/175 (58.29%), Query Frame = 2
Query:  395 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            ME  +NK+   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSS  G+ L   G   L        Q+          P  +KV V            +S      ++   E+DKM +DVSKQFFP     G  + RV L +G+GVA L+  + GT DAV+ D
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQFFP-NVAIGYEDPRVKLHVGDGVAFLKFVAEGTYDAVIVD 173          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.244e-29
Identity = 81/175 (46.29%), Postives = 99/175 (56.57%), Query Frame = 2
Query:  395 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            ME   N +   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSS  G+ L   G   L        Q+          P  +KV V            +S      ++   E+DKM +DVSKQFFP     G  + RV L +G+GVA L+    GT DAV+ D
Sbjct:    1 MEEQGNNESAYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQFFP-NVAIGYEDPRVKLHVGDGVAFLKNVPEGTYDAVIVD 173          
The following BLAST results are available for this feature:
BLAST of EY702481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SPD2_ARATH1.299e-3444.60Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC1.588e-3245.59Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_PEA1.588e-3245.27Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD1_ARATH4.620e-3243.90Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPDE_COFAR8.713e-3149.70Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD2_PEA8.713e-3143.48Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD2_DATST8.713e-3146.20Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPDE_NICSY2.535e-3047.57Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_DATST2.535e-3047.43Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPD2_HYONI6.244e-2946.29Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702481 ID=EY702481; Name=EY702481; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGGCGGCAGCAAACGCAAACGCTAACACAAACACGAGCCGC
ATCTTTGCGAAGCCAGATTTGTAACTTTTTATAATATATTCTCCCACCAC
TCGCAGCTTGCAATTTTTTATTTTAATTTTTCTTTTTATATATAAAAGGC
AAAGAGGGACGGAGATTCTGTTTGTGTGGCGCCTCTTGACTCCCGAGAGT
TGCCTCGGCAGTCAGTTTTCATTAGAAGTGAAGTGATTGTTGGGTTTTCG
GGGGTTTGAAAGCAGAAAGAATAATCAATAATAATATCTGTTATGGCGGA
AACTGGGTCTGCTGCTGCCACTGATTTGCCGTTGAAGAGGCCGAGAGATG
ACGGAGAGAAGGAGGCTAATAACAACAATAACGGGAGTGTGTTGATGGAG
ATGGACTCTAACAAACAGCCTGATTGTATCTCCTCTGTTATTCCTGGCTG
GTTCTCTGAAATCAGCCCAATGTGGCCCGGTGAGGCACATTCATTGAAGG
TTGAGAAAATCTTGTTTCAAGGGAAGTCTGATTACCAGAATGTCATGGTC
TTTCAGTCTTCACATATGGGAAGGTTCTTATTTTGGATGGGGTGATTCAG
CTTACTGAGAGGGATGAATGTGCATATNCAGAAATGATCACTCACCTTCC
ACTTTGGTCCATTCCCAACCCGAAGAAAGGTCTGGGTATTGGGTGGAGGA
GATGGTGGGGGTCTTGCGGGAAGTATCTCGTCATTCTTCCTGTGGAGAAG
ATTGATATCTGGGGAATTGGATAAAATGGGAGTTGATGTCTCCAAACAAT
TTTTCCCCTGATGGACCTGGTGGGGTTTGAGGAATCTCCGGGTGACCCTC
CAAATGGGGGAGGGAGTTGCGGTCTTGGAGGCTGGTTCCTGAGGGACTAT
TGATGCGGTTTTAGGGGATC
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