EY702469

Overview
NameEY702469
Unique NameEY702469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702469_ssr307 microsatellite EY702469_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1817 contig Csv1_Contig1817:82..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702469 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.842e-24
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   73 DSKCAERCKQA*VQDRCLNYCGICCEDCKCVPSGTYGNKHEGPCYRDKVNKKGKPKCP 246
            DSKC  RC +A + DRCL YCGICCE+CKCVPSGTYGNKHE PCYRDK N KGK KCP
Sbjct:   31 DSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88
[Close]
BLAST of EY702469 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   79 KCAERCKQA*VQDRCLNYCGICCEDCKCVPSGTYGNKHEGPCYRDKVNKKGKPKCP 246
            KC  RC +   +  C+ +C  CC  C CVP+GTYGNK   PCY +   K+G PKCP
Sbjct:   57 KCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112
[Close]
BLAST of EY702469 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:   79 KCAERCKQA*VQDRCLNYCGICCEDCKCVPSGTYGNKHEGPCYRDKVNKKGKPKCP 246
            +C  RC     +  C+ +C  CC  C CVP G YGNK   PCY +   ++GKPKCP
Sbjct:   41 RCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96
The following BLAST results are available for this feature:
BLAST of EY702469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNAK1_SOLTU5.842e-2477.59Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC5.130e-1248.21Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC9.675e-1144.64Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-C12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702469 ID=EY702469; Name=EY702469; organism=Citrus sinensis; type=EST; length=422bp
ANAANNNGAGGGGGAGAGAAACGGTAGCCTGCAGTACCGGTGCCGAATTC
CCCCTCCCACCACCCGTCCGGTGACAGCAAGTGTGCGGAAAGGTGCAAGC
AAGCATGAGTGCAGGACCGGTGCTTGAACTACTGCGGGATATGCTGTGAG
GACTGCAAGTGTGTGCCTTCTGGGACTTACGGAAACAAGCATGAGGGGCC
TTGCTACAGGGACAAGGTTAACAAGAAGGGGAAGCCCAAGTGCCCTTGAA
TTTCGAAACCGCATCAAAATTCAAATGCATCTGCTTTAATTATGTTCTGT
AAACAGTATTATTATTATTGGTACTATTATATTATGATGGTGGTGGAATG
TTAATGCACTTATATTATTCTTAAATAATAAAAGCTATTTCTCTTGGTGG
GAAGAAAAGAAAAAAAAAAAAA
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