EY702465

Overview
NameEY702465
Unique NameEY702465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702465_ssr437 microsatellite EY702465_ssr437:437..448. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4724 contig Csv1_Contig4724:279..1168. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702465 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.826e-68
Identity = 136/219 (62.10%), Postives = 158/219 (72.15%), Query Frame = 1
Query:   91 SKANLFSYFNQDQHERSSISVFPKSCAGSCSMKLRSQALRLSS--PLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLXIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAVGKHHQIDAGLGQQRDWRRK 741
            SK +LF     + H     S  P S  G   +K     L+L S  PL S F+G  +VF +++    R SS+   I+AQT L IG AQ+WWEKGL+ NMRE++SAQ+LV+SL+NAGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL VHVLPFFRFYRG+ GRVCSFSCTNATIKKF+DA+ KH      LG  +    K
Sbjct:    6 SKTSLFLGACGNHHRVDDFSFSPVSFGGF-GLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEK 220          
BLAST of EY702465 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.240e-59
Identity = 114/210 (54.29%), Postives = 143/210 (68.10%), Query Frame = 1
Query:  115 FNQDQHE-RSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLXIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAVGKHHQIDAGLGQQRDWRRK 741
            FN+ + + R    + PKS +  C +  R  +    SP T     +G +    K IP         +  QT L IG+ Q+WWEK L+PNM+ V S QDLV SL NAGDKLVVVDFFSP CGGCKALHPKIC++AE NP+V+FLQVNYEEH+S+C SLN+HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+A+ KH +    +G+ +    K
Sbjct:   14 FNRARFDLRDFAGISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPA-------FVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEK 216          
BLAST of EY702465 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.398e-48
Identity = 95/176 (53.98%), Postives = 121/176 (68.75%), Query Frame = 1
Query:  208 RLSSPLTSDFHGHGVVFQE--NKAIPKRGSSSKFSISAQTG-LXIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAVGKHHQIDAGLGQQR 726
            +LS  ++ D   H +   +  N+ +    SSS     A+T  + + +  RWWEK    NM E+ SA  LV+SL NAGD+LVV+DF+SPGCGGCK+LHPKICQLAE NP+V FL+VN EE ++MC+ LNVHVLPFF+FYRGA G+VCSFSCT ATI KFK A+ KH      LG  +
Sbjct:   28 KLSPFMSLDLKEHPMASADFTNQTLTAFSSSSASPFQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLGDAK 203          
BLAST of EY702465 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.817e-33
Identity = 70/197 (35.53%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  106 FSYFNQDQHERSSISVFPKSCAGSCSMKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLXIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAVGKHH 696
            FS +        S  +  +    SC+      +   SS LT+      +VF           +   S+  Q      +  +WWE+   PNM ++ SA+  + +L +AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P++ FL+VN++E+KS+C SLNV VLP+F FYRGA G+V SFSC+ A  +K ++A+ +H+
Sbjct:   13 FSLYASSNSTPISTPIEARQLLSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSR--------NQSLSVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERHN 201          
BLAST of EY702465 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.055e-30
Identity = 70/187 (37.43%), Postives = 110/187 (58.82%), Query Frame = 1
Query:  214 SSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLXIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAVGKHHQIDAGLGQQRDWRRKTSSHWLLPRSF 774
            SSP  S  H H      +    +R  S    +     +   +  +WWE+   PNM ++ S ++ + +LS AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+VN++E+K MC SLNV VLPFF FYRGA G++ SFSC+ A +KK   +V    Q++ G+  Q    ++T+S +   R +
Sbjct:   52 SSPSCSSSHYHPSSGLGSHLPLRRPKSQVVRVKVDENVAETEPPKWWERNA-PNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK-AISVSPFPQLELGITLQ---TKRTTSLFFFDRIY 233          
The following BLAST results are available for this feature:
BLAST of EY702465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRXL1_ARATH3.826e-6862.10Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH4.240e-5954.29Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH4.398e-4853.98Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH6.817e-3335.53Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL6_ARATH7.055e-3037.43Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-C07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702465 ID=EY702465; Name=EY702465; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGATTATTAATAAAATCTGTTTTCTTTATTTTCGGAGGCTA
GCAAGAAAATTTGTTGTGAGAAAACATGGCGGAGTTGTTGAGCAAAGCGA
ATCTGTTTTCATATTTTAATCAAGATCAACACGAGAGGAGCAGCATATCT
GTGTTTCCAAAAAGCTGTGCTGGGTCGTGCTCAATGAAATTGAGATCCCA
GGCTCTGAGGCTCTCTTCACCACTAACCAGTGATTTTCATGGACATGGAG
TTGTTTTTCAAGAAAATAAAGCCATCCCCAAGAGAGGAAGCTCATCCAAG
TTCTCCATTAGTGCACAGACTGGCCTTANAATTGGGAAGGCACAAAGGTG
GTGGGAAAAGGGGCTGCAACCAAACATGAGAGAGGTGGCTTCTGCACAAG
ATTTGGTGGAATCCCTTTCGAATGCTGGGGATAAACTTGTTGTTGTTGAT
TTCTTCTCCCCTGGCTGTGGTGGATGCAAAGCTCTCCATCCCAAGATATG
TCAATTGGCAGAGATGAACCCAGATGTGCAGTTTCTTCAGGTTAATTATG
AGGAGCACAAATCCATGTGTTATAGCCTTAATGTTCATGTCCTGCCTTTT
TTCCGGTTTTACAGAGGGGCTCATGGCCGAGTATGCAGCTTTAGTTGCAC
TAATGCAACGATCAAGAAATTTAAAGATGCGGTGGGTAAGCATCACCAGA
TCGATGCGGGCTTGGGCCAACAAAGGGACTGGAGGAGAAAGACCTCCTCC
CATTGGCTGCTACCAAGATCTTTTCTTTCACTACACCGCAAAACCACCTC
CAATGCCCCCTCCTGCAGGAGAAGAAGGAGGATTGGCCGAAATACTTCCC
CCCACCCAATCCCAATCTACCATTACCTCTTCCTCAAC
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