EY702462

Overview
NameEY702462
Unique NameEY702462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702462_ssr417 microsatellite EY702462_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702462 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 9.976e-70
Identity = 140/232 (60.34%), Postives = 165/232 (71.12%), Query Frame = 2
Query:   56 MAELLSKANLVSYFNQDQHNKSSISVFPKSCAG-SCSMGWGGQALELSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLGESLSNAGDKLVVVDFFSPGWGGCKALHPKIWQLAEMNPDVQFLQVNYEDHKSMWYSLNGHVLAFFRVYRGAHGPVCSFSXTNGTIKKFKDALANHTPDRCGLGPNKGLEEKKLLPWAANK 748
            M E++SK +L      + H     S  P S  G      +    L+   PL S F+G  +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+L +SL+NAGDKLVVVDFFSPG GGCKALHPKI Q AEMNPDVQFLQVNYE+HKSM YSL  HVL FFR YRG+ G VCSFS TN TIKKF+DALA H PDRC LGP KGLEEK+L+  AANK
Sbjct:    1 MTEVISKTSLFLGACGNHHRVDDFSFSPVSFGGFGLKKSFSCLKLKSQKPLRSVFYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANK 229          
BLAST of EY702462 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.546e-54
Identity = 114/225 (50.67%), Postives = 143/225 (63.56%), Query Frame = 2
Query:   74 KANLVSYFNQDQHNKSSISVFPKSCAGSCSMGWGGQALELSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLGESLSNAGDKLVVVDFFSPGWGGCKALHPKIWQLAEMNPDVQFLQVNYEDHKSMWYSLNGHVLAFFRVYRGAHGPVCSFSXTNGTIKKFKDALANHTPDRCGLGPNKGLEEKKLLPWAANK 748
            K N +S+       +    + PKS +  C +     +    SP T     +G +    K IP         +  QT L IG+ Q+WWEK L+PNM+ V S QDL  SL NAGDKLVVVDFFSP  GGCKALHPKI ++AE NP+V+FLQVNYE+H+S+  SLN HVL FFR YRG+ G VCSFS TN TI+KFK+AL  H  ++C +G  KGLEEK+L+  AANK
Sbjct:    8 KLNPISFNRARFDLRDFAGISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPA-------FVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKELVAMAANK 225          
BLAST of EY702462 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.231e-44
Identity = 104/222 (46.85%), Postives = 134/222 (60.36%), Query Frame = 2
Query:   86 VSYFNQDQHNKSSISVFPKSCAGSCSMGWGGQALELSS-PLTS-DFHGHGVVFQENKAIPKRGSSSKFSISAQTG-LRIGKAQRWWEKGLQPNMREVASAQDLGESLSNAGDKLVVVDFFSPGWGGCKALHPKIWQLAEMNPDVQFLQVNYEDHKSMWYSLNGHVLAFFRVYRGAHGPVCSFSXTNGTIKKFKDALANHTPDRCGLGPNKGLEEKKLLPWAA 742
            VS F+Q+  +KS +S F               +L+L   P+ S DF         N+ +    SSS     A+T  + + +  RWWEK    NM E+ SA  L +SL NAGD+LVV+DF+SPG GGCK+LHPKI QLAE NP+V FL+VN E+ ++M + LN HVL FF+ YRGA G VCSFS T  TI KFK AL  H  +RC LG  KGL+EK+L   A+
Sbjct:   16 VSPFSQENQSKSKLSPF--------------MSLDLKEHPMASADF--------TNQTLTAFSSSSASPFQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLGDAKGLDEKELAALAS 215          
BLAST of EY702462 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.851e-24
Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  122 SISVFPKSCAGSCSMGWGGQALELSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLGESLSNAGDKLVVVDFFSPGWGGCKALHPKIWQLAEMNPDVQFLQVNYEDHKSMWYSLNGHVLAFFRVYRGAHGPVCSFSXTNGTIKKFKDALANH 673
            S  +  +    SC+  +G  +   SS LT+      +VF           +   S+  Q      +  +WWE+   PNM ++ SA+    +L +AGD+LV+VDF+    G C+A+ PK+ + A+ +P++ FL+VN++++KS+  SLN  VL +F  YRGA G V SFS +    +K ++A+  H
Sbjct:   25 STPIEARQLLSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSR--------NQSLSVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERH 200          
BLAST of EY702462 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.254e-20
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  194 SSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLGESLSNAGDKLVVVDFFSPGWGGCKALHPKIWQLAEMNPDVQFLQVNYEDHKSMWYSLNGHVLAFFRVYRGAHGPVCSFSXTNGTIKK 649
            SSP  S  H H      +    +R  S    +     +   +  +WWE+   PNM ++ S ++   +LS AG++LV+V+F+      C+AL PK+ + A  +PD+ FL+VN++++K M  SLN  VL FF  YRGA G + SFS +   +KK
Sbjct:   52 SSPSCSSSHYHPSSGLGSHLPLRRPKSQVVRVKVDENVAETEPPKWWERNA-PNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202          
The following BLAST results are available for this feature:
BLAST of EY702462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRXL1_ARATH9.976e-7060.34Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH1.546e-5450.67Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH3.231e-4446.85Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH4.851e-2432.61Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL6_ARATH3.254e-2035.53Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702462 ID=EY702462; Name=EY702462; organism=Citrus sinensis; type=EST; length=946bp
AATGTACCCTGCAGTACCCGTCCGGAATCCCTTCTCCACCCACCCGTCCG
GAAAAATGGCTGAGTTGTTGAGCAAAGCGAATCTGGTTTCATATTTTAAT
CAAGATCAACACAATAAGAGCAGCATATCTGTGTTTCCAAAAAGCTGTGC
TGGGTCGTGCTCAATGGGGTGGGGGGGCCAGGCTCTGGAGCTCTCTTCAC
CACTAACCAGTGATTTTCATGGACATGGAGTTGTTTTTCAAGAAAATAAA
GCCATCCCCAAGAGAGGAAGCTCATCCAAGTTCTCCATTAGTGCACAGAC
TGGCCTTAGAATTGGGAAGGCACAAAGGTGGTGGGAAAAGGGGCTGCAAC
CAAACATGAGAGAGGTGGCTTCTGCACAAGATTTGGGGGAATCCCTTTCN
AATGCTGGGGATAAACTTGTTGTTGTTGATTTCTTCTCCCCTGGCTGGGG
GGGATGCAAAGCTCTCCATCCCAAGATATGGCAATTGGCAGAGATGAACC
CAGATGTGCAGTTTCTTCAGGTTAATTATGAGGACCACAAATCCATGTGG
TATAGCCTTAATGGTCATGTCCTGGCTTTTTTCCGGGTTTACAGAGGGGC
TCATGGCCCAGTATGCAGCTTTAGTTNCACTAATGGCACCATCAAGAAAT
TTAAAGATGCGTTGGCTAACCATACACCAGATCGATGCGGCCTTGGGCCC
AACAAAGGACTGGAGGAGAAAAAGCTCCTCCCATGGGCTGCTAACAAGAT
CCGCCCTCAACTACCCACCAAAACACCTCCAATGCCGCTCCTGCAGAAAA
AGAGTAGGATTGGCAAAAATACCTCCCCTCACTCAATCCCAATCCACCAT
AACTCTTCCCCCCACCCTTGAACCCCTCAAGAAATTAAAAACAACCCTTG
GGTCCCCTGGAAAAAAAATGGTAATTTTTGCCACCCACCCCCCCCC
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