CX300684

Overview
NameCX300684
Unique NameCX300684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300684 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 FRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLNNYKQVPVVEENLPSRDELLVFFKGRYEKLQAS 328
            FR  E+QE   +E+ EML++++   L +KKFF GDK G  DIA   +  WL + E+  GV L  S KFP    W + Y     V+E+LPSRDELL FF+ R++ + AS
Sbjct:  112 FRKGEEQEKGKEEVYEMLKVLDNE-LKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAFFRARFQAVVAS 218          
BLAST of CX300684 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.470e-19
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   17 EDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLNNYKQVPVVEENLPSRDELLVFFKGRYEKLQAS 328
            +++E  ++E  E LQ +E   L +KKFF G++ GLVDIA   I  W+ I ++I G++LF S KFP L+ W   +   P V E LP RD L  +FK RYE L AS
Sbjct:  122 KEREKNVEETYEALQFLENE-LKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224          
BLAST of CX300684 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 FRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLNNYKQVPVVEENLPSRDELLVFFKGRYEKLQAS 328
            FR  E+QE   +E+ EML++++   L +KKFF GDK G  DIA   +  WL + E+  G  L +S KFP    W + Y     V E+LP RDELL FF+ R++ + AS
Sbjct:  112 FRKGEEQEKGKEEVYEMLKVLDNE-LKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFRARFQAVVAS 218          
BLAST of CX300684 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    8 RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLNNYKQVPVVEENLPSRDELLVFFKGRYEKLQASA 331
            R  E+QE   +E+ EML++++   L +KKFF GDK G  DIA   +  WL + E+  GV L  S KFP    W   Y     ++E+LP RDELL F++ R +   ASA
Sbjct:  113 RKGEEQEKDKEEVCEMLKVLDNE-LKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAFYRSRCQAAAASA 219          
BLAST of CX300684 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.970e-12
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    5 FRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLNNYKQVPVVEENLPSRDELLVFFKGRYEKLQAS 328
            F   E+QE   +E  EML+I++     +KK F GDK G  DI       +L I+E++ G+ L  S KFP   AW + Y      EE  PSRDELL+ ++   + + AS
Sbjct:  112 FSKGEEQEKAKEEAYEMLKILDNE-FKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEY--CTQNEEYFPSRDELLIRYRAYIQPVDAS 216          
The following BLAST results are available for this feature:
BLAST of CX300684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GSTX3_TOBAC3.353e-1944.44Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN7.470e-1945.19Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX2_TOBAC4.842e-1842.59Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC1.409e-1741.67Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_SOLTU3.970e-1237.96Probable glutathione S-transferase OS=Solanum tube... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08001B03SK PhyRootSw1 Citrus sinensis cDNA clone C08001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300684 ID=CX300684; Name=CX300684; organism=Citrus sinensis; type=EST; length=389bp
ATTGTTTCGAAGCATTGAAGATCAAGAGAATACGATGAAAGAAATCTTGG
AAATGCTGCAAATTGTTGAAGAACATGGCTTAGGAGAAAAGAAATTTTTC
CACGGAGACAAGATTGGCTTAGTTGACATAGCATTTGGTTCTATTGTTCA
TTGGTTGCAAATCATTGAAGATATAGTGGGAGTGAAACTCTTTGAATCTC
ACAAATTCCCAGGCTTGCACGCGTGGTTAAATAATTACAAGCAAGTCCCT
GTAGTTGAAGAAAACCTCCCTAGTAGGGATGAACTGTTGGTCTTTTTCAA
AGGTCGCTATGAAAAGTTGCAGGCTTCTGCCAGAATGCAGTAGCGTAAAA
TTTGCTCGTTGAGTACTTGGGTCTCTCATTATGCTTATT
back to top