CX078571

Overview
NameCX078571
Unique NameCX078571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_BOVIN (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.013e-28
Identity = 66/153 (43.14%), Postives = 97/153 (63.40%), Query Frame = -3
Query:  387 FGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQ-DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 842
            FGML       K+ V++ N     P  +   S  G+  + K++LVVR DLKMG GK+A+QC+HAA   Y ++ + +  LL++WE CGQPK+VV   +++ + +L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   37 FGML------PKSSVRETN-----PDTETEASILGESGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKEWEYCGQPKVVVKAPDEETLVELLTHAKVLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_HUMAN (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.936e-28
Identity = 66/162 (40.74%), Postives = 97/162 (59.88%), Query Frame = -3
Query:  387 GLVIGFIFGMLLDLSKP---GKNYVKKKNFLPRKPQEQVSVSSDGDQDLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 863
            GL +G   GM L  S     G     K +      + + S+  D  +  K++LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   +++ +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   18 GLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGE-YKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_MOUSE (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.694e-27
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  387 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 731
            + K++LVVR DLKMG GK+A+QC+HAA   Y +  +    +L++WE CGQPK+VV   ++  + +L   A+  GL   ++ DAGRTQ+  GS+TVL IGPGP  L+D VTG  +L
Sbjct:   66 EYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTLIQLLTHAKTLGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_SCHPO (Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe GN=SPAC19A8.14 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.073e-25
Identity = 71/195 (36.41%), Postives = 100/195 (51.28%), Query Frame = -3
Query:  387 VSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQ--VSVSSDGDQD------------------------LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 893
            +S  P   + G V+GF+ G    ++   + Y  K       P+++  VSVS+D D +                         K+VLVVR DL M  GKIA+QCAHAA   Y      D  L+R WE  GQ KI +  + ++ +  L   A + GL   V+ DAGRTQ+++GS TVL IGPGP S+++ VTG  +L
Sbjct:   10 ISSFPAAVLVGAVVGFMIGRKYSVADASRGYSSKNANKASNPEKESPVSVSNDEDSESETELLDMLKGNSSLAALALAEGQTKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLVRIWENAGQAKITLQAQTEETLELLQAQAMSLGLCARVIHDAGRTQIASGSATVLGIGPGPVSVINEVTGSLKL 204          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_DROME (Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster GN=CG1307 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.947e-25
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = -3
Query:  384 QVSVSSDG----DQDLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 761
            + SVS  G    + + K+VLVVR DLKMG GKIA+QC H A G Y   +     LLR WE CG  KI V  +++ E+  + + AE   L T ++ DAGRTQ+ A SKTVLA+GP   + +D VTG  +LL
Sbjct:   57 EASVSDKGYGGLNDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVESEAELMAIKKEAERQQLNTCLIRDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKLL 186          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULTO (Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii GN=pth PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHL----LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K+V+VVR DL MG GKIA+Q AHAA  +  +++ S   L    L KW + GQPKIVV   +  E+NK +E A    LPT ++ DAG+TQ+  G+ T + IGP P  LVD +TG  +LL
Sbjct:    4 KMVIVVRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKVPSLDELNKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKLL 121          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_PYRFU (Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus GN=pth PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.732e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V+V R DLK+  GK+A Q AH A     E  +  R     W + GQ K+VV  +N++E+ KL   AE  GLPT ++ DAG T++  G+ TVLAIGPGP+ +VD VTG  +LL
Sbjct:    6 KQVIVARSDLKLSKGKLAVQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKAQNEEELFKLKSEAEKLGLPTALIRDAGLTEIPPGTITVLAIGPGPEEVVDKVTGHLKLL 119          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_METS5 (Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pth PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.660e-21
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQ--SDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V++VR D+ MG GKIA+Q AHAA  +  + M   S R  L  W   GQPK+VV   + +++    + A + GLPT V++DAGRTQV  G+ T   IGPGP  L+D +TG  +LL
Sbjct:    1 MKMVVMVRTDINMGKGKIAAQVAHAAVSLVLDCMSRSSWRDWLDSWLHEGQPKVVVKVSSLEDLLSRVDKARSQGLPTTVISDAGRTQVEPGTVTCAGIGPGPDDLIDKITGDLKLL 117          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULSO (Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus GN=pth PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GKIA+Q AHAA  +   ++ S+    +  L +W   GQPKI+V   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++LVDS+TG  +LL
Sbjct:    2 IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULAC (Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldarius GN=pth PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD-----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+ ++VR DL MG GKIA+Q AHAA  +  E++Q       +  L  W   GQPKIV+  KN  E+ + +  A  +GLP  ++ DAG+TQ+  G+ T   IGPGP+ ++D++TG  +LL
Sbjct:    1 MKMAVLVRTDLDMGKGKIAAQVAHAAVSLVLEIVQKRSKAEWKEWLEMWINQGQPKIVLKVKNLDELLEKYNKALQSGLPATIIQDAGKTQIEPGTITCAGIGPGPEEMIDNITGDLKLL 120          
The following BLAST results are available for this feature:
BLAST of CX078571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PTH2_BOVIN3.013e-2843.14Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos ta... [more]
PTH2_HUMAN3.936e-2840.74Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo s... [more]
PTH2_MOUSE9.694e-2747.83Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus mu... [more]
PTH2_SCHPO4.073e-2536.41Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccha... [more]
PTH2_DROME6.947e-2546.92Probable peptidyl-tRNA hydrolase 2 OS=Drosophila m... [more]
PTH_SULTO8.492e-2347.46Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii GN=... [more]
PTH_PYRFU2.732e-2146.49Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus GN=... [more]
PTH_METS54.660e-2145.30Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (... [more]
PTH_SULSO7.948e-2143.70Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus... [more]
PTH_SULAC7.948e-2141.67Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H04-O7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078571 ID=CX078571; Name=CX078571; organism=Citrus sinensis; type=EST; length=901bp
TTTTTTTTTGCAGGTGAAACCTTACACTTAATACATACAAATGGCAGCTA
TGTTAAGTGAGATTCAGCTATCATCTTTCCTATATTCCTATTCCAAAACT
AATCTGATCAAGGAAGGGTTACAGTCTTCTGTGCCATCTAAGGTAACATC
AAATTGAAATAACCAACTATCCTCCAGATGAAAATTGCAGAAATTCCAGC
AACTGCTTGCACCTGCCTTGAGTACTGGCCAACTCAAGGGAAAGAAGCCT
TTTCCACCAGAATATGACAGCTGCCTGGCAAATGAAACCAAGAGTCAAGA
AGATTTTGTTGGTAATCTTGATCTTTTAACATTGTCGTCTGGGAAATTTT
AAGCAAAAAGTCCTCCATTCTTAAGCATAACTAGAGCAGGCGCTGTTTCC
CTGTCACAGAATCCACCAAAGATTTGGGTCCAGGTCCGATGGCAAGAACC
GTCTTCGACCCAGCTGAAACCTGTGTCCGTCCAGCATCCGCAACAACAAA
AGTTGGAAGGCCTGTGTTTTCGGCTACTTCCCACAGCTTATTCATTTCTT
GTTGATTCTTGCACGTAACAACTATCTTGGGCTGCCCACATTGCTCCCAT
TTTCTCAGAAGGTGCCGGTCACTTTGCATTAGTTCTGCATACATCCCAGT
GGCTGCATGGGCACATTGTGATGCAATCTTTCCACTCCCCATCTTCAGGT
CTTGCCTAACCACCAAAACCAATTTGAGGTCTTGGTCACCGTCACTTGAG
ACAGAAACTTGTTCTTGTGGTTTCCTCGGTAAGAAATTTTTCTTTTTCAC
ATAATTCTTACCTGGCTTTGATAAATCTAATAACATCCCAAAAATGAAAC
CAATTACAAGGCCTGGGATGAAATTCTCTGGCCTAAAACTCACTGCTAAC
G
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