CX078561

Overview
NameCX078561
Unique NameCX078561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078561 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 56/208 (26.92%), Postives = 95/208 (45.67%), Query Frame = -3
Query:   62 GTRWNIGNGKKVQFWWDCLVSQDKPLMFHTLSPIFDNIINDVAVDFTDNNGN*K*DIFGHL*PNNIILRIASFELPTDQRGDDQVYWEKSTKGVFTIKSTYCVIT--NYSQSIEDQVWSLAWSWQVPQCIRILIWLLLHDRLKTKIELIRRHIPTGRGCNRCSASLESTLYMLRDCMVAKKV*KHVIPEPYHQAFYSSNLKEWMSKNL 679
            G  W  G+G++++FW D  VS  KPL+         +    VA D                  NN  L + +  L       D++ W+ S  G F+++S Y ++T     +      ++  W  +VP+ ++  +WL+ +  + T+ E  RRH+     C  C   +ES L++LRDC     +   V+P+   Q F+S +L EW+  NL
Sbjct:  172 GVGWIPGDGQQIRFWTDRWVS-GKPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNL 378          
The following BLAST results are available for this feature:
BLAST of CX078561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RNHX1_ARATH6.303e-1526.92Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_9G08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9G08-M15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078561 ID=CX078561; Name=CX078561; organism=Citrus sinensis; type=EST; length=882bp
CCTCCAGATAGTAACTCTAAACAAACACCTCTAGTTTCTTCGTAAAAAGC
CAAGAATTCTTTAAATTCTTACTCATCCACTCCTTCAGATTTGAAGAATA
GAAGGCTTGATGGTAAGGCTCGGGGATGACATGTTTCTAAACTTTTTTGG
CCACCATGCAATCACGAAGCATATATAGCGTACTTTCCAAGCTGGCACTA
CAACGATTACATCCTCTCCCCGTTGGAATATGCCTCCTTATAAGCTCAAT
CTTAGTCTTTAATCGATCATGTAACAGAAGCCAGATCAAGATGCGAATAC
ACTGGGGAACTTGCCAACTCCAAGCTAAACTCCAGACCTGATCCTCTATG
CTTTGACTGTAATTAGTGATTACACAATATGTAGACTTGATTGTAAAAAC
ACCCTTTGTGGATTTTTCCCAGTATACTTGGTCGTCACCTCTTTGATCCG
TCGGCAGTTCAAAGGATGCAATTCTAAGAATAATATTATTAGGTTATAAA
TGTCCAAAAATATCTTACTTTTAATTACCATTATTATCTGTAAAATCCAC
AGCCACATCGTTAATAATATTATCAAAAATAGGACTCAAGGTATGAAACA
TCAGGGGCTTATCTTGTGAAACCAAACAGTCCCACCAAAACTGAACCTTT
TTGCCGTTCCCTATATTCCAACGAGTTCCCTATTAGCGTGTCATTCAAAC
CTTCCCAACAGATTTCCACAACTGAGAGCCATTTATCATCGGCAACACAG
AGGGCAGATTTTAATGATCCAAGCCATATTTAATAAGCAATACTTGAGCC
TAAAGTTCGTTGGTGAAGAGATAAGACCCCAACCCACTTTCATCAGAAGA
GCTCTATTCATCATTCCAAGGTTCTTAAACCC
back to top