EY702429

Overview
NameEY702429
Unique NameEY702429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702429_ssr285 microsatellite EY702429_ssr285:285..296. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10308 contig Csv1_Contig10308:23..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702429 vs. ExPASy Swiss-Prot
Match: SALR_PAPBR (Salutaridine reductase OS=Papaver bracteatum GN=SALR PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.584e-16
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  378 CEAISFHGVTVALTARDEKRGLAAVEKLKNSGCDNVIFHLLDVTDP-ASVDSLVHFVSSQFGK 563
            C+ +S  G+ V LT RD  RGL AVEKLKNS  +NV+FH LDVTDP  ++ SL  F+ ++FGK
Sbjct:   29 CKQLSSSGIMVVLTCRDVTRGLEAVEKLKNSNHENVVFHQLDVTDPITTMSSLADFIKARFGK 91          

HSP 2 Score: 36.1946 bits (82), Expect = 1.584e-16
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  331 RHAVVTGANKGIGFEIVRQLAS 396
            R AVVTG NKGIGFEI +QL+S
Sbjct:   13 RCAVVTGGNKGIGFEICKQLSS 34          
BLAST of EY702429 vs. ExPASy Swiss-Prot
Match: SDR1_ARATH ((+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.680e-16
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  378 CEAISFHGVTVALTARDEKRGLAAVEKLKNS---GCDNVIFHLLDVTDPASVDSLVHFVSSQFGK 563
            C  ++  G+ V LT+RDE RGL AVE LK        +++FH LDV DPAS+ SL  FV +QFGK
Sbjct:   23 CRQLASEGIRVVLTSRDENRGLEAVETLKKELEISDQSLLFHQLDVADPASITSLAEFVKTQFGK 87          

HSP 2 Score: 40.817 bits (94), Expect = 2.680e-16
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1
Query:  331 RHAVVTGANKGIGFEIVRQLAS 396
            R+AVVTGAN+GIGFEI RQLAS
Sbjct:    7 RYAVVTGANRGIGFEICRQLAS 28          
BLAST of EY702429 vs. ExPASy Swiss-Prot
Match: MNR1_CAPAN ((+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.680e-15
Identity = 29/65 (44.62%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  378 CEAISFHGVTVALTARDEKRGLAAVEKLK---NSGCDNVIFHLLDVTDPASVDSLVHFVSSQFGK 563
            C  ++  GV V LT+RDEK+G+ A+E+LK   N   ++++FH LD+ DPAS+ SLV+ + ++FG+
Sbjct:   25 CRQLASKGVVVVLTSRDEKKGIEAIERLKEESNFTDEHILFHQLDIMDPASISSLVNLIKTKFGR 89          

HSP 2 Score: 37.3502 bits (85), Expect = 3.680e-15
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  331 RHAVVTGANKGIGFEIVRQLAS 396
            R+AVVTG NKGIG+E  RQLAS
Sbjct:    9 RYAVVTGGNKGIGYETCRQLAS 30          
BLAST of EY702429 vs. ExPASy Swiss-Prot
Match: SDR2_ARATH (Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.051e-14
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  378 CEAISFHGVTVALTARDEKRGLAAVEKLKNS---GCDNVIFHLLDVTDPASVDSLVHFVSSQFGK 563
            C  ++  G+ V LT+RDEK+GL AVE LK        +++FH LDV+DP SV SL  FV + FGK
Sbjct:   23 CRQLANKGIRVILTSRDEKQGLEAVETLKKELEISDQSIVFHQLDVSDPVSVTSLAEFVKTHFGK 87          

HSP 2 Score: 37.7354 bits (86), Expect = 1.051e-14
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  331 RHAVVTGANKGIGFEIVRQLAS 396
            R+A+VTG N+GIGFEI RQLA+
Sbjct:    7 RYAIVTGGNRGIGFEICRQLAN 28          
The following BLAST results are available for this feature:
BLAST of EY702429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SALR_PAPBR1.584e-1655.56Salutaridine reductase OS=Papaver bracteatum GN=SA... [more]
SDR1_ARATH2.680e-1650.77(+)-neomenthol dehydrogenase OS=Arabidopsis thalia... [more]
MNR1_CAPAN3.680e-1544.62(+)-neomenthol dehydrogenase OS=Capsicum annuum GN... [more]
SDR2_ARATH1.051e-1449.23Short-chain dehydrogenase/reductase 2 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-H03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702429 ID=EY702429; Name=EY702429; organism=Citrus sinensis; type=EST; length=563bp
CCACGCGTCCGGTAATTAATTGTCTTCGAAGAAAACGAAAGCAACATAAT
TATTCATGATCTCACCACGTGAAACGATGTGAACAAAAATATCAGAATAA
TATTATTTTACTTTCCTGGAGATCCATGATGGAGATTGCGCAATACATAT
ACATCTGAAGGGAGTATTCTTCTAGCCATGAAAAGGAGCAACCAAGTACA
TTATTCGATGGGAGAAGCAACAACCAAGTACATTATTCCCCCTTCCTCTT
CTTCTTTCATTTTTTGTTTTTACTTCCTTTCGGACTCTCTCTCTCTGTTT
TTTTTTTTTTTCAATATGAAATTTCTCAGCAGGCATGCAGTTGTTACAGG
AGCAAACAAGGGAATTGGGTTTGAAATTGTGAGGCAATTAGCTTCCATGG
AGTCACTGTGGCCTTAACTGCTAGAGATGAGAAGAGGGGTCTTGCAGCTG
TTGAAAAACTCAAAAACTCTGGCTGTGACAATGTGATCTTTCATCTGCTT
GATGTGACAGACCCCGCTAGCGTTGACTCTCTAGTTCATTTCGTCAGTAG
TCAGTTTGGGAAG
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