EY702424

Overview
NameEY702424
Unique NameEY702424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702424 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.968e-19
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  545 FAYMQLINHGVSSSLVEKVKAEILDFFDMPIDEKRKFWQQPGDIEGFGQLFIASEEQKLDWGYGFTLXTLPLI*XKLTXCP-VASSIRDDLEXXLSELK 838
            + + QL+NHG+ SS ++KVK+EI DFF++P++EK+KFWQ+P +IEGFGQ F+ SE+QKLDW   F     P+   K    P +    RD LE   SE++
Sbjct:   81 WGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQ 179          

HSP 2 Score: 83.9593 bits (206), Expect = 1.320e-15
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   73 MEAKATVIASSLVEPSILELANNKPLTTVPPRYVRPDIDHPLIRNDSSAE-QLPVIDMHKLVSGD--DSELEKLDRACKDWGFFEVHNN 330
            MEAK     SS++ PS+ E+   K +TTVPPRYVR D D   + +D   + ++P+IDM +L S    DSE+EKLD ACK+WGFF++ N+
Sbjct:    1 MEAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNH 89          
BLAST of EY702424 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  545 FAYMQLINHGVSSSLVEKVKAEILDFFDMPIDEKRKFWQQPGDIEGFGQLFIASEEQKLDWGYGFTLXTLPLI*XKLTXCPVA-SSIRDDLEXXLSELK 838
            + + QLINHGV   ++EK+K +  DFF +P  EK  + Q P  +EG+GQ F+ SEEQKLDW     L T P+    +   P + +S R+ +E    EL+
Sbjct:   79 WGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQ 177          
The following BLAST results are available for this feature:
BLAST of EY702424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRG1_ARATH1.968e-1947.47Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA4.247e-1440.40S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702424 ID=EY702424; Name=EY702424; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGGCGAGAGGAGGAAAAAAAAAAGGTAATAGCTAGAAATC
AGATAATCTAAATCTATATAATATGGAGGCAAAAGCAACAGTTATTGCGA
GTTCTCTCGTGGAGCCTTCGATTCTGGAGCTCGCAAATAATAAGCCACTG
ACCACTGTTCCTCCACGTTATGTCCGCCCTGACATAGACCATCCCTTGAT
TCGCAACGATTCTTCAGCAGAACAACTTCCAGTCATCGACATGCACAAGC
TGGTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCGTGCATGCAAA
GACTGGGGTTTCTTTGAGGTACATAATAATTGAGCAGTGATATTCGGACA
ATAGAATTGGTCAAAATGTTGACTAAAAGAAGGTAAATTGGTGTCGGTTT
ACTCACTTGATGGGAAAAGCAGTTAAACCGACACTAGTATATCGTTGTTT
TTGTTAGCGTTTTGATTATCAGTTTCTTTAGTAGTTTTCCCTCAACTTTA
AATTTCCTACATGAACCGTGTACGGAAAGAACATCTTGCTTTTATTTGCA
TATATGCAGTTGATAAATCATGGAGTGAGCAGTTCATTGGTGGAGAAAGT
GAAAGCAGAGATTCTAGACTTCTTTGATATGCCAATTGATGAGAAAAGGA
AGTTTTGGCAACAACCAGGAGATATTGAGGGATTTGGGCAGCTCTTTATT
GCGTCTGAAGAGCAGAAGCTTGATTGGGGATACGGCTTTACTTTGNTCAC
TCTCCCACTTATCTGANGAAAACTCACTTGNTGCCCAGTTGCCTCTTCCA
TCAGAGATGACTTGGAANGTTNACTATCAGAACTGAAAATCTTGCCCTGA
AAATCCTGATCAATGGCTAAGCTCTAGAATGGATCCTATGATATGAAGAG
T
back to top