EY702420

Overview
NameEY702420
Unique NameEY702420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702420_ssr63 microsatellite EY702420_ssr63:63..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig131 contig Csv1_Contig131:582..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.931e-33
Identity = 73/193 (37.82%), Postives = 112/193 (58.03%), Query Frame = 3
Query:  222 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPTKKI 800
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++RP +  +  V Q FD  +FNF K+   EVLF+            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQ-TIKSVRQAFDPVQFNFNKIRPGEVLFRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL 238          
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  222 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPT 791
            P++  DS +   W  R++ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG  A++NHLH   YY+A   P+E AP+
Sbjct:   55 PLSRFDSALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQ-NIRSVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLHLHCYYLAHPLPVEGAPS 236          
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 72/194 (37.11%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  219 PPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPTKKI 800
            PP++  DS +   W  R++ GLFRY +    T+ +PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF ++   EVLF+    +D            V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E AP++ +
Sbjct:   54 PPLSHFDSALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQ-NIKSVRQEFDPEQFNFNQIRPGEVLFRLHRKQD--------CSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEGAPSEPL 238          
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 71/193 (36.79%), Postives = 111/193 (57.51%), Query Frame = 3
Query:  222 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPTKKI 800
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVL++            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQ-TIKSVRQAFDPEQFNFNKIQPGEVLYRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL 238          
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.598e-29
Identity = 77/250 (30.80%), Postives = 127/250 (50.80%), Query Frame = 3
Query:  138 LPLYAFKRVNKFKTEMGVHG------HEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPTKKI 800
            LP    +  N F+ +    G       E  E    ++  D  +  +WE+++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  V Q F+ N+FN+ K+  EE++FQ   SE +  V  H                       S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +
Sbjct:    8 LPNATVEEYNYFEEDFVFQGLSWKKRQEFAEDTSFLSPFDKALQSKWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQKFNPNQFNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGFASVNHLHLHGFYLDHELLIESSCSKPL 256          
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.072e-29
Identity = 74/231 (32.03%), Postives = 120/231 (51.95%), Query Frame = 3
Query:  186 GVHGHEVREPEPPVAFL---DSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEV----QFHPSAP-------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPTKKI 800
            G+   E R+     +FL   D  +  +WE ++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  + Q F+ N+FN+ K+  EE++FQ   SE        + H S+                    ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +
Sbjct:   28 GLSWKERRQYAEDTSFLSPFDKALQSKWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQLNIQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVNGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGFASVNHLHLHGFYLDHDLFIESSSSKPL 257          
BLAST of EY702420 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.936e-28
Identity = 65/181 (35.91%), Postives = 99/181 (54.70%), Query Frame = 3
Query:  258 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFXAYYMAFAFPIEKAPTKKI 800
            W ++   GLFRY +   ETR++PG  G+IAQLN  R  ++R  +  +  V Q FD  +FNF K+  +E+LF+ +   + +                 V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG FA++NHLH   YY+     IE +P K +
Sbjct:   39 WTEKRNTGLFRYRLDELETRILPGSRGYIAQLNIMRGTERRKPQ-EILSVRQNFDPKQFNFNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLHLHGYYLNHRLKIESSPAKLV 203          
The following BLAST results are available for this feature:
BLAST of EY702420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_HUMAN6.931e-3337.82UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_MOUSE1.182e-3238.95UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_BOVIN1.182e-3237.11UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_MACFA1.001e-3136.79UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
CO058_XENTR1.598e-2930.80UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_XENLA6.072e-2932.03UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
CO058_DANRE3.936e-2835.91UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702420 ID=EY702420; Name=EY702420; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGAAGAGGGTGCCGACGGTTGTTTCGAATTATCAGAAAGAG
GAGACGGAGGAGGCTGCTGCTGCTGCTCGTCGTGTAAGCGGGTGCGGGAG
GAATTGCTTGAACAAATGTTGCATTCAAGGTGCAAAGCTTCCTTTATATG
CTTTCAAGAGGGTGAACAAGTTTAAAACTGAAATGGGTGTGCATGGACAC
GAGGTTAGAGAGCCCGAGCCTCCCGTTGCATTTCTGGACTCGCTCGTTCT
TGGGGAGTGGGAGGACCGCGTACAGAGAGGACTATTTCGCTATGATGTTA
CTGCCTGTGAAACCAGGGTCATTCCTGGTCAGTATGGTTTCATTGCTCAA
CTGAACGAGGGCCGCCACCTGAAGAAAAGGCCTACTGAGTTCCGTGTTGA
TAAGGTCCTCCAGCCTTTTGATGGGAACAAGTTCAACTTTACCAAAGTGG
GGCAAGAAGAGGTGCTCTTCCAGTTTGAGGCAAGCGAAGATGGTGAAGTC
CAGTTTCACCCAAGTGCCCCCATTGATGTTGAGAATTCTCCAAGTGTTGT
TGCCATCAATGTGAGTCCTATTGAGTACGGGCATGTGCTGTTGATCCCAC
GAGTTCTTGAGTGCTTGCCACAGAGGATTGACCGTGATAGCTTCTTGCTC
GCACTTTACATGGCTGCAGAAGCTGGGAATCCATACTTCAGGTTGGGTTA
CAACAGCTTGGGTGCATTTGCTACCATCAACCACCTTCACTTCCANGCTT
ACTACATGGCCTTTGCCTTTCCCATTGAGAAGGCTCCTACCAAGAAGATA
TCTCTACTGGCAGTGGTGTGAAGATCTCTGAGCTTTTAACTATCCAGTCA
GAAGCCTCGTCTTTTGAGGTGGAAACTCTCTGGAAGACTTATCCACACAG
T
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