EY702419

Overview
NameEY702419
Unique NameEY702419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9981 contig Csv1_Contig9981:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 6.067e-90
Identity = 166/193 (86.01%), Postives = 175/193 (90.67%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVI 763
            MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYSTFE ELAD IPVVKTSI GTRIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VALTHTDLD+ETEE+IADVLGVEVF QTIAGNILVGSYC+  N+G LVHPHTSIEDLDEL TLLQVPLVAGTVNRG  VI
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 4.807e-87
Identity = 159/226 (70.35%), Postives = 183/226 (80.97%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDTQQLN-SLLLRGFQLRE 859
            MA R  FEN+CEVG F+KLTNAYCLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC F N+G LVHP TSIED DEL +LLQVPLVAGTVNRG  VIAAG+ VNDW AFCG DT     S++   F+L E
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 226          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.386e-86
Identity = 157/226 (69.47%), Postives = 182/226 (80.53%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDTQQLN-SLLLRGFQLRE 859
            MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC F N+G LVHP TSIED DEL +LLQVPLVAGTVNRG  VIAAG+ VNDW AFCG DT     S++   F+L E
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 226          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.546e-85
Identity = 154/210 (73.33%), Postives = 177/210 (84.29%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D IP+V T+I GTRIIGR+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS  N+G LVHP TS++D +EL +LLQVPLVAGTVNRG  V+ AG+ VND+ A  G DT
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDT 210          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.546e-85
Identity = 156/226 (69.03%), Postives = 181/226 (80.09%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDTQQLN-SLLLRGFQLRE 859
            MA R  FEN+CE+G F+KLTN+YCLVAIGGSE+FYS FE ELA  IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC F N+G LVHP TSIED DEL +LLQVPLVAGTVNRG  VIAAG+ VNDW AFCG DT     S++   F+L E
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 226          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.309e-84
Identity = 151/210 (71.90%), Postives = 176/210 (83.81%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            MA R  FENS E+GVFS LTN+Y LVA+GGSE+FYS FEAEL DV+PVV T+IGGTRIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEE+IADVL VEVFRQT+AGN+L GSYC+  N+G LVHP TSI++ DEL +LLQVPLVAGT+NRG  VI AGL VNDW AF G DT
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDT 210          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.497e-84
Identity = 154/210 (73.33%), Postives = 174/210 (82.86%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            MATRL +ENSC+VGVF KLTN YCLV   GS+ F  T E  LAD IPVV+TSI GTRI+GRL AGNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEE+IADVLGVEVFRQT++GN+LVG+YC+  N+G LVHP TSI D DEL +LLQVPLVAGTVNRG   +AAG  VNDWTA  G+DT
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADT 210          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 6.081e-82
Identity = 149/210 (70.95%), Postives = 175/210 (83.33%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            MA R+ FEN+ ++GVF+KLTN YCLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIGRL  GN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEE+IADVL VEVFRQTIA N LVGSY    N+G +VHP TSI+D DEL +LLQVPLVAGTVNRG  V+AAG+ VNDW +F G +T
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNT 210          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.268e-79
Identity = 147/212 (69.34%), Postives = 178/212 (83.96%), Query Frame = 2
Query:  185 MATRLMFENS-CEVGVFSKLTNAYCLV-AIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            MATRL ++N+ CE+GVFSKLTNAYCLV A   S +F++ +E++L  VIP+V TSIGG+  IG LC GNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQTIA N LVGSYCS  N G +VH +T++E++ EL  L+QVPLVAGTVNRG +VI+AGLTVNDWTAFCGSDT
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDT 212          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.829e-71
Identity = 127/210 (60.48%), Postives = 162/210 (77.14%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            MA R+ +E S +VGVF  LTN+YCLV +GG+++FYS  EAEL+D+IPVV TSI  TRI+GRL  GN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC   + GCLV   T  E   E+  LLQ+P+VAGT NRG  +I AG+ VNDW AFCG D+
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDS 210          
The following BLAST results are available for this feature:
BLAST of EY702419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_BETVU6.067e-9086.01Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_MOUSE4.807e-8770.35Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN2.386e-8669.47Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_YEAST1.546e-8573.33Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_BOVIN1.546e-8569.03Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_SCHPO1.309e-8471.90Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DICDI6.497e-8473.33Probable eukaryotic translation initiation factor ... [more]
IF6_DROME6.081e-8270.95Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH1.268e-7969.34Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL4.829e-7160.48Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-G05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702419 ID=EY702419; Name=EY702419; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGGTTTG
TTTCCGGCCGAAAGGGTAACAAGTGAAGGGCCGCCTCATCATCATTATCA
TCATCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTCCGTCATTTTGCT
TTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTA
TGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCT
TATTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGA
GGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCA
CTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTG
CCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACC
TGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCA
ATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGAC
AGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAG
GCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCNTCA
ACAGAGGATGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAA
CTTTNCACTCTCTTGCAAGTACCTCTGGTGGCTGGGACTGTGAACCGTGG
AAAGCGAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCT
GTGGATCAGACACACAGCAACTGAACTCTCTGTTATTGAGAGGGTTTCAG
TTGAGGGAGCTCAACTACTGCCCTTGGGACGAGATGAGA
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