EY688671

Overview
NameEY688671
Unique NameEY688671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8410 contig Csv1_Contig8410:459..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY688671 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.102e-43
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 3 
Query:    3 KEDMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERR 284
            K++MYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R
Sbjct:  125 KKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQR 218
[Close]
BLAST of EY688671 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3 
Query:   12 MYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTY---------------QPNKRKESKYVSKRYERRRD----GPPAER 281
            +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ +++G+ +P   P Y               + N R  +   S+ +ERRR+    GPP +R
Sbjct:  138 IYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYD-PKYHEEWIRNNARANERNRRNDRPRNNDRSRNFERRRENMAGGPPPQR 245
The following BLAST results are available for this feature:
BLAST of EY688671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA1.102e-4385.11DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH9.099e-1439.45Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688671 ID=EY688671; Name=EY688671; organism=Citrus sinensis; type=EST; length=646bp
AGAAAGAAGATATGTATGCTTTTAGCACCACTACTTACACTGGATTCCAA
TGCACAGTATCCGAAGAAACCTCAGAGAAATTCAAAGGCCTGCCTGGTGT
TCTTTGGGTGTTGCCCGATTCATACATAGATGTCAAAAATAAAGATTATG
GAGGTGATAAATATGTCAATGGAGAGATCATTCCCTGCACATATCCCACT
TATCAGCCAAACAAACGAAAAGAATCAAAATATGTGAGCAAAAGATATGA
GAGACGAAGAGATGGCCCTCCTGCTGAAAGAAGAACGAGACAAGCAGCTG
GTCAGTCAGAATCAGCGTCGTCATAAGTTTGCGACTCCAAAAGCCAATCA
TACTACTGCCACCATGCGTATCAGCAGTCTAATCAAGACACCTGTTTTAT
GAGTTCTCAAGCTGTTCTTGGTAGTTTTTGTAATGGATATCATTTAATGT
AGTTAGGATAGAAATTCTCTGGTAATCGCCATCATTTAGTTTTGTGCCTC
TGGGCTTGTTATTTGAAATGTTGTCCACTGACATTTCATGGTTGCCGAAG
GTCTGCTGTCTATTGTCTAAAAGTACTGTTGTGTCAGATTTCTCATTTAG
CTTTAATATATAAAAGTAATTTTGGCCGTAAAAAAAAAAAAAAAAA
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