EY688670

Overview
NameEY688670
Unique NameEY688670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:239..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.811e-44
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 1
Query:   43 KLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 315
            KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:   70 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.766e-43
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.132e-41
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.132e-41
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTDENLLS IKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.132e-41
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1
Query:   43 KLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD+ LL+QIKDGF EGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   70 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTD++LLSQIKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   34 TRPKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            T  KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:   67 TGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of EY688670 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.570e-40
Identity = 78/90 (86.67%), Postives = 87/90 (96.67%), Query Frame = 1
Query:   43 KLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 312
            KLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ G+TKDDL+LPTD++LL+QIKDGFA+GKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   70 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
The following BLAST results are available for this feature:
BLAST of EY688670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
IF5A_MANES6.811e-4493.41Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL5.766e-4390.32Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A5_SOLTU4.132e-4184.95Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A3_SOLLC4.132e-4189.25Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_SOLLC4.132e-4184.95Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_SENVE5.397e-4188.89Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A4_SOLTU5.397e-4188.17Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_TOBAC5.397e-4184.95Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL5.397e-4184.95Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A2_MEDSA1.570e-4086.67Eukaryotic translation initiation factor 5A-2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688670 ID=EY688670; Name=EY688670; organism=Citrus sinensis; type=EST; length=580bp
CAGCTGCAGTACGGTCGGATTCCGGGTCGACCCACGCGTCCGAAGCTTGA
AGATATTGTGCCTTCCTCCCACAATTGTGATGCTCCCCATGTTACTCGCA
CTGACTATCAGCTGATTGATATATCCGAAGATGGTTTTGTGAGCCTTTTA
ACTGAAACCGGAAACACCAAGGATGATCTGAGGCTTCCTACCGATGAAAA
TCTGCTTAGCCAGATTAAAGATGGGTTTGCTGAAGGAAAAGACCTTGTGG
TGACCGTTATGTCGTCAATGGGAGAGGAGCAGATCTGTGCCCTTAAGGAC
ATTGGTCCTAAGAATTAACTATAATCCCATGGCATTAGCTTTGGCTGATA
GCAGGAGAACTCTTTCTTATGTTGCCAACATGGAGACTATCTACTATCCA
TGTCCACAACAAACTTCCATTAAGATAGTATTTTGGCTGTGTATTAAAAT
ATCGTCGTGCTTGTGATAAAGGAAGTGGAAAGAAAGCAGGTGTCGTCAAT
CTCCTGTTGAACGAAATTTATGTTGACAGCATCTCGGACTTATATATATT
TTACTATTTTATTAAAAAAAAAAAAAAAAA
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