CX078117

Overview
NameCX078117
Unique NameCX078117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4416 contig Csv1_Contig4416:1..803. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX078117 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 2
Query:  596 TIAHLFWNNLFRRDNFTYFCQILLLLSTAGTISMCFDSFEQERFDAFESIVLIPLPTRSMLFMISAHD 799
            TIAHLFWNN FRRDNFTYFCQILLLLSTAGTISMCFD FEQERFDAFE IVLI L T SMLFMISA+D
Sbjct:   66 TIAHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYD 133          
BLAST of CX078117 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 2
Query:  596 TIAHLFWNNLFRRDNFTYFCQILLLLSTAGTISMCFDSFEQERFDAFESIVLIPLPTRSMLFMISAHD 799
            TIAHLFWNNLFRRDNFTYFCQI LLLSTAGTISMCFD F+QERFDAFE IVLI L T  MLFMISA+D
Sbjct:   77 TIAHLFWNNLFRRDNFTYFCQIFLLLSTAGTISMCFDFFDQERFDAFEFIVLILLSTCGMLFMISAYD 144          
BLAST of CX078117 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.690e-16
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  599 IAHLFWNNLFRRDNFTYFCQILLLLSTAGTISMCFDSFEQERFDAFESIVLIPLPTRSMLFMISAHD 799
            +A+L +NNL   DNFTYFCQI LLLSTA T+ MC D F+QE  +AFESIVLI L T SMLFMISA+D
Sbjct:   67 VANLVYNNLII-DNFTYFCQIFLLLSTASTMVMCLDYFKQESLNAFESIVLILLSTCSMLFMISAYD 132          
The following BLAST results are available for this feature:
BLAST of CX078117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NU2M_OENBE1.247e-2789.71NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_ARATH8.086e-2786.76NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_MARPO1.690e-1668.66NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_7A12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7A12-B23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078117 ID=CX078117; Name=CX078117; organism=Citrus sinensis; type=EST; length=803bp
CACAGGATAGGCAATTGAGAGATAGAACTAGCCTATTCGTTATGGGGAAT
CAATGCTCCGGGCCGAATAAAGCTTACCTCCGGCACCTGGCTTTCTCCGG
CACATATTAGCTTAGCTGCGCTTAATCAGCTAAAGCTTCCTCTCTGGCGG
CCACTTTCCTTACCTTACCTACGCTACACTCCTACGCTAGGCCTGCGCCT
GCTGAGCAAGATGCATTGCGATTTCCTCTTCTGTGGACGCACCGGAATGG
AATATGATCCGTGACGGGAAGAGATTTTTCTCCGGCGGGCTTTCTCTCGT
AAAGCCAAACCAAAGACGCCCCAAGACAAGGTACAACTGTTGGGAAGGGG
ACATGATCAATAGAACCTGGCTGGATCCGGGCTGGGATAGTGGTGCCCAT
TCCTAACCAGTTCCGAAAAGCGCTCATGCTGGAGGGAGCATCCCCACTTA
GTGATCGGTCCGCTAGTTCACGCAAATCCGAAGAAGTTATCACGGACGAG
CCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGGGCTTTCCTGAGG
TATCTAATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTAT
TGCCCATTTATTCTGGAATAATCTTTTTAGGAGGGACAATTTTACATATT
TCTGCCAAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGT
TTCGATTCTTTCGAACAAGAGAGGTTTGATGCTTTTGAATCCATTGTATT
AATTCCACTTCCTACTCGCAGTATGCTCTTTATGATCTCGGCTCATGATT
CAA
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