CX078105

Overview
NameCX078105
Unique NameCX078105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3171 contig Csv1_Contig3171:290..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX078105 vs. ExPASy Swiss-Prot
Match: U136_ARATH (UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 42/107 (39.25%), Postives = 54/107 (50.47%), Query Frame = -1 
Query:  305 MGMSMSQKXXXXXXXXXXXXXXXXXLKSGSQKXXXXXXXXXXXLYYVYTQLPTKPVXXXXXXXXXXXXXXGVMGSRFKKSGKVFPAGVVSLISLVMTGGYLHGIMRS 625
            M  S+SQK                 LK GS+             YYVYT+LP  PV              G+MGSR+ ++ KV PAG+VS++SLVMTG YLHG++RS
Sbjct:    1 MDSSLSQKFTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALFYYVYTELPGNPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLHGLIRS 107
The following BLAST results are available for this feature:
BLAST of CX078105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U136_ARATH2.627e-1139.25UPF0136 membrane protein At2g26240 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_7A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7A05-B9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078105 ID=CX078105; Name=CX078105; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTCACCAACTTTCAAACCTTCTTTATTAAAGTGACGTTAGTTGTC
GGCAAAGAAATTAGCGTAGAACCAAACAAAGTTCGGGAACAAGACCTACA
ATGGCACGAGCACAATTTACATGCACGTGCTTTCCAACACTGTAAACTCC
GGAAAGATGGTATACAAAATGTTCACACACTCAACATCTATAGTCTCAAG
GACTTCACATGCCAAAAACACTCATTGCAGTTGCCACATAAACAGGAACG
CTAAAACTTCATCTCTACCATCACTGTCTTAACATTATATGAATTTCAAT
GCAGACTGCGCATGATGCCATGCAGGTATCCCCCTGTCATCACAAGGGAA
ATGAGAGAGACCACACCAGCTGGAAATACCTTCCCTGACTTCTTGAAACG
AGAACCCATCACTCCCAAAAGAGCAGCAGATAAGCCAAGCCCTATGGAAG
ATGCAAGAACTGGCTTTGTGGGAAGCTGAGTATAAACATAATAAAGCAGC
GAGGCCGACACTCCTCCTGCTAACAGAGACTTCTGACTCCCACTTTTCAG
ATATCCCATAAGACCACCCACTCCAACAAGGGCAGCATAACCAAGAGTGA
GTTTCTGAGACATAGACATCCCCATCTTATTCTTCTTCCCACTTTCGTCC
GACGACTCCCCCTCACCTTCACCTTCACCTTCACCTCCGCCTCCGCCTCC
ACCGCCACCACCTCCGCCGCCGCTACCGCTACCGTCTCCGCCTCCGCCTC
CGATATCAGGCTCGATCTCGATCCC
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