CX078104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.606e-45 Identity = 95/230 (41.30%), Postives = 144/230 (62.61%), Query Frame = 3 Query: 84 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764 R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q ++ K Q + + +++P+ TVY G ++S +T + + F Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK-------------QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 225 HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12 Identity = 50/205 (24.39%), Postives = 89/205 (43.41%), Query Frame = 3 Query: 69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-------------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDF 614 D S V+VG++ P++T ++ F+ G + +++K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T + V+ G ++ +TD + FS F + RV + +G+ FV F E A AI +NG + ++C W + Q D+ Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDY 290
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.375e-43 Identity = 95/247 (38.46%), Postives = 143/247 (57.89%), Query Frame = 3 Query: 84 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS-------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764 R++YVGN+ VT L+ ++FS GP + CK+I + S Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q ++ K Q + + +++P+ TVY G ++S +T + + F Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTK-------------QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242 HSP 2 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 50/205 (24.39%), Postives = 89/205 (43.41%), Query Frame = 3 Query: 69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA------SSQREDTSG-------------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDF 614 D S V+VG++ P++T ++ F+ G + +++K YGFV ++++ A AIV + G+ + G+ I+ NWA S+Q +T + V+ G ++ +TD + FS F + RV + +G+ FV F E A AI +NG + ++C W + Q D+ Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDY 307
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 6.365e-42 Identity = 96/241 (39.83%), Postives = 140/241 (58.09%), Query Frame = 3 Query: 84 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764 +++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S+ K Q +E +++P TVY G ++S +T + + F Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTK-------------QLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTF 234 HSP 2 Score: 70.0922 bits (170), Expect = 1.529e-11 Identity = 45/182 (24.73%), Postives = 84/182 (46.15%), Query Frame = 3 Query: 90 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA----------YASSQRE---------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 566 V+VG++ P++T ++ F+ G + +++K YGFV +F++ A AI + G+ + G+ I+ NWA Y S+ ++ + + V+ G ++ +T+ + FS F + RV D +G+ FV F + E A AI +NG + ++C W Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 170.629 bits (431), Expect = 8.313e-42 Identity = 96/241 (39.83%), Postives = 140/241 (58.09%), Query Frame = 3 Query: 84 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764 +++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S+ K Q +E +++P TVY G ++S +T + + F Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTK-------------QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTF 234 HSP 2 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 44/182 (24.18%), Postives = 81/182 (44.51%), Query Frame = 3 Query: 90 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------------YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 566 V+VG++ P++T ++ F+ G + +++K YGFV +F++ A AI + G+ + G+ I+ NWA Y + + + V+ G ++ +T+ + FS F + RV D +G+ FV F + E A AI +NG + ++C W Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 3.166e-33 Identity = 72/167 (43.11%), Postives = 106/167 (63.47%), Query Frame = 3 Query: 84 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575 R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A+ TLNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+ VMWD +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWAAK Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21 Identity = 62/204 (30.39%), Postives = 106/204 (51.96%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAP 683 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ S+ + + + D + DAP Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21 Identity = 62/204 (30.39%), Postives = 106/204 (51.96%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAP 683 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ S+ + + + D + DAP Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21 Identity = 62/204 (30.39%), Postives = 106/204 (51.96%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAP 683 +VYVG + +V+ LL E+F GP+ + K YGFV++ A AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G+ S+ + + + D + DAP Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21 Identity = 85/289 (29.41%), Postives = 137/289 (47.40%), Query Frame = 3 Query: 48 GNLPPRFDASTCRSVYVG------NIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQREDTS-------GHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ---SSDF------------------KSVVELTNGTSEDGQEKSN--------EDAPENN----PQYTTVYVGNLSSEVTSVDLHRHF 764 G+L P +D +T R ++ N+ N L SS GP K+ Y FVD+ AA A++ NG I P +K+NWA +S + S + ++FVGDL+P VT++ LF F + + + S A+++ DQ TG S+G+GFV F N ++ Q A++++ G +L R I+ G TSG ++ ++D+ K L+NG + G ++++ + P N P TTV++G LSS VT +L +F Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV-----GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYF 333
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.380e-20 Identity = 62/224 (27.68%), Postives = 113/224 (50.45%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTS 743 ++YVG + +V+ ++L E+ GP+ + K + +GFV++ A AI LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F ++M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G+ ++ + + +D + D P P T + + + + + + Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAA 235 The following BLAST results are available for this feature:
BLAST of CX078104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078104 ID=CX078104; Name=CX078104; organism=Citrus sinensis; type=EST; length=773bpback to top |