CX078044

Overview
NameCX078044
Unique NameCX078044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4914 contig Csv1_Contig4914:1..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX078044 vs. ExPASy Swiss-Prot
Match: Y2253_MYCBO (Uncharacterized protein Mb2253c OS=Mycobacterium bovis GN=Mb2253c PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.301e-17
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = -2 
Query:  428 DGASKGNPGQAGAGAVL-RAEDGNVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 784
            DG S+GNPG AG GAV+  A+   V+   ++ +G ATNNVAEYR LI GL  A++ G     V  DSKLV  Q+ G WK+ + +L  L  +A+ L  +F+      + R  N+ AD  AN
Sbjct:    8 DGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAN 127
[Close]
BLAST of CX078044 vs. ExPASy Swiss-Prot
Match: Y2228_MYCTU (Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.301e-17
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = -2 
Query:  428 DGASKGNPGQAGAGAVL-RAEDGNVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 784
            DG S+GNPG AG GAV+  A+   V+   ++ +G ATNNVAEYR LI GL  A++ G     V  DSKLV  Q+ G WK+ + +L  L  +A+ L  +F+      + R  N+ AD  AN
Sbjct:    8 DGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAN 127
The following BLAST results are available for this feature:
BLAST of CX078044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2253_MYCBO4.301e-1742.50Uncharacterized protein Mb2253c OS=Mycobacterium b... [more]
Y2228_MYCTU4.301e-1742.50Uncharacterized protein Rv2228c/MT2287 OS=Mycobact... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_6F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078044 ID=CX078044; Name=CX078044; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTAGGATAATCAACTTCAAAGTAAATAAAAGTTGT
TCAAAAGCGCTACAAGTCATTGGAGCTAATGGCTAAGATGCACAACAGAC
TAAACATCTTGAGGCCAATGGGTCCATTTGGAGATCATCGCTTACACATA
AAAGACCAGAGCAACAAAATAGTTAGAAAATTACAAGCCCAGACAGAAGT
TTGCTCCCAAAATTGCTTTATATAAATCCTGCCATTTCATTCAACTGCTG
AATTTGAAGAGGGGCTGCCGGTAATCAATCATCAATAGAGAAGCAACTCC
AATGCCTTCGATATTTAACATGCTTATGTACTTCGTTTACTTCACCCTGC
CTTTTAGCATTTTGAGGCTATTTTGTAAAACTAGAACACTCTGCTTCGAC
TTGCCCATCCTTAAGATAAATACCCATGTTGGCTTGAGCATCAGCTTCAG
AGTTCAAATTCCTCAAAATATGATTGATCTGGAATGATTGAAACTTCTCT
TTGAGCTCCTTTGCTTCTTTGCACAAGCCAGCCAAATTCTGGTTATTTAT
CTTCCATAATCCTTGAATCTGCATACAGACAAGCTTAGAGTCTCCTTGGA
CACGAATATGTTTATATCCTTTCTGAAGAGCATACTTCAATCCTAAAATT
AAAGCTCGATATTCGGCAACATTATTCGTTGCAATGCCCACTCCTTCCCG
AAGTCGGTAGACCACATTGCCGTCTTCAGCACGCAAAACTGCTCCTGCAC
CAGCTTGTCCAGGATTTCCTTTTGAGGCACCGTCAAAC
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