CX077951

Overview
NameCX077951
Unique NameCX077951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077951 vs. ExPASy Swiss-Prot
Match: CC019_RAT (Uncharacterized protein C3orf19 homolog OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 54/159 (33.96%), Postives = 90/159 (56.60%), Query Frame = 1 
Query:  190 MPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKD---KLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFF------RKSTEL-----ESQQPHGSDVSSAAPSDNNEHED 624
            M +K++ ++ V  SS+++LKA+L++ QEE ++ K L    V F + K        +S +N+GV +R+ KD   KLE +   D S     LE+KA+LYEK+ +G+  DEE ++ Y VDF       RK  E+     +S+     D + AA +D+++ E+
Sbjct:    1 MDRKKKPLD-VTASSLVDLKAELFRKQEEFKQEKLLKDSGV-FGKPKTSNKKPSIWSKQNAGVSSRAEKDAEQKLEEQKTLDKSRE--KLEEKAKLYEKMTKGDFLDEEVEDMYLVDFTQKIIDKRKEMEVLGATRDSRIKEERDAAVAAANDDDDEEE 155
[Close]
BLAST of CX077951 vs. ExPASy Swiss-Prot
Match: CC019_CHICK (Uncharacterized protein C3orf19 homolog OS=Gallus gallus GN=RCJMB04_26a16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 44/120 (36.67%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:  190 MPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSA--SYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRK 543
            M ++++ ++ V  SS+++LKA+L++ QEE +K K L    + F + K        ++ +N+GV  R+ KD +E KA  D +   S   LE+KA+LYEK+ +G+  DEE ++ Y VDF +K
Sbjct:    1 MDRRKKPLD-VAASSLVDLKAELFRKQEEFKKEKLLKDAGI-FAKPKPSNKKPSIWTKQNTGVAKRAEKD-IEQKAEEDQTLDQSRKKLEEKAKLYEKMTKGDFPDEETEDLYLVDFTQK 117
The following BLAST results are available for this feature:
BLAST of CX077951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CC019_RAT1.151e-1133.96Uncharacterized protein C3orf19 homolog OS=Rattus ... [more]
CC019_CHICK1.503e-1136.67Uncharacterized protein C3orf19 homolog OS=Gallus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_6A06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A06-A12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077951 ID=CX077951; Name=CX077951; organism=Citrus sinensis; type=EST; length=759bp
GAAAGGAGAGAATCAGGCAGCAGCAGTGGCTCTCATCTCATCTCTATGAA
ACCCCAATCGTGAATCTCAAAGAAGACAAATCAAAATCAAAATCAAGAGC
AAAAAATGGGTGAGGAACAGGATCAGGAACAGGAGAGGAAGAAGAGAGTG
GTGGTGGAATCACTGGGATGGCTGACGGAATCATCAATAATGCCGAAAAA
GCAACGGTCGATAGAAGGAGTGGGTCTCTCCTCCATCTTGGAACTCAAGG
CCCAGCTTTATCAGTCTCAAGAAGAATCTAGAAAATCCAAGGAGTTGAAT
GGCCCTGATGTTGAGTTCCTCCGCGCCAAGAAGAAGATCGCTCCACGCGA
TTCTTTCTCCCTCAAGAACTCCGGCGTCGACGCCCGCTCTCTCAAGGACA
AGCTTGAGTTGAAAGCAGCTAATGATGGATCAGCCAGCTATGCTGCATTA
GAGAAGAAGGCTGAGTTATATGAGAAACTGCAGAGGGGAGAGCTATCAGA
TGAGGAAGACAAGGAGAAGTATTGTGTTGACTTTTTCCGTAAGAGTACAG
AGCTGGAATCGCAGCAGCCACATGGCTCTGATGTTTCTTCTGCTGCACCA
TCAGACAATAATGAACACGAGGACAATGGTTCTATGCTTTTCAACATGAA
GTTTGTTGCACCTGGGCGAACATCTGGAACAATGGACAACAGTGAACACA
AGCGTTTTGTGAGGGAAGTTCATGAAGAAGTAAACCAAGCAAGAGAAAAG
GCATTTGAG
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