CX077939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.621e-37 Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVRS 381 KT F+ G + Y RM FGL NAPATFQRC+ I ++ + V+++D VF S D L L LV ++ + NL L DKC F+ ++ GH+++ GI+ + K + I P P KE+++ Sbjct: 319 KTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKA 444 HSP 2 Score: 84.3445 bits (207), Expect = 3.621e-37 Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 3 Query: 393 GFYRRFIKYFSKVSRPL*NLLAKDVPF-VFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYLI 755 G+YR+FI F+ +++P+ L K++ + AF+KLK L++ PI++ P+++ F L DA + A+GAVL Q H + Y S TLN+ +NYST +KE+LA+++A + FR YL+ Sbjct: 450 GYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLL 567
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 6.145e-37 Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVRS 381 KT F+ G + Y RM FGL NAPATFQRC+ +I ++ + V+++D +F S L+ + LV + + NL L DKC F+ K+ GHI++ GI+ + K I + P P KE+R+ Sbjct: 318 KTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRA 443 HSP 2 Score: 85.8853 bits (211), Expect = 6.145e-37 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 3 Query: 393 GFYRRFIKYFSKVSRPL*NLLAKDVPFVFDD-SCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYLI 755 G+YR+FI ++ +++P+ + L K + AFEKLK L+ PI+Q P++ F L DA N A+GAVL Q H I + S TLND LNYS +KE+LA+++A + FR YL+ Sbjct: 449 GYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLL 566
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.113e-28 Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 396 FYRRFIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +YRRFIK F+ SR + L K+VPF + D C AF LK L + ++Q P++S F + DA A GAVL Q + + YAS N STT++E+ A+ +A+ FR Y+ Sbjct: 559 YYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYI 677 HSP 2 Score: 70.8626 bits (172), Expect = 1.113e-28 Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVR 378 T F+ G++ + R+ FGL AP +FQR + F + ++M+D V G S L +LT V +C E NL L+ +KC F + + GH + KGI D K D+I N P P R Sbjct: 428 TSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSAR 551
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.792e-25 Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 3 Query: 390 AGFYRRFIKYFSKVSRPL*NLL-----------AKDVPFVFDDSCLVAFEKLKQLLTSSPII-QPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 A +YR FIK F+ ++RP+ ++L +K +P F+++ AF++L+ +L S +I + P++ PF+L DA IGAVL Q I + S TL NY+T ++E+LA+++AL K +++L Sbjct: 424 ASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI----SRTLKQPEQNYATNERELLAIVWALGKLQNFL 552 HSP 2 Score: 66.6254 bits (161), Expect = 1.792e-25 Identity = 37/127 (29.13%), Postives = 64/127 (50.39%), Query Frame = 1 Query: 1 EKTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVRS 381 EKT F+ G + + R+ FGL NA + FQR + + + + V+++D +F ++ + H+ VL+ I+ N+ ++ +K F + G I+S G + D K I P P V +VRS Sbjct: 293 EKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRS 419
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.865e-17 Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 3 Query: 396 FYRRFIKYFSKVSRPL*NLL-----------AKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +YR+FI+ ++KV++PL NL + VP D++ L +F LK +L SS I+ P ++ PF L DA N+AIGAVL Q I Y S +LN NY+T +KEMLA++++L+ R+YL Sbjct: 367 YYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYL 496 HSP 2 Score: 88.1965 bits (217), Expect = 5.464e-17 Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEV-RSLSMLVFIDVSLNILAKFLDP 441 KT F+ G + + R+ FGL NAPA FQR I I + + V+++D VF + +D +L LVL + NL +N +K HF+ Q G+I+++ GI+ D K IS +PPP +VKE+ R L M + + AK P Sbjct: 235 KTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKP 381
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14 Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEV-RSLSMLVFIDVSLNILAKFLDPYKIYL 456 KT F P G + Y M FGL NAP+TF R + F + RF+ V+++D +F +S + HL VL+R +NL++ KC F ++ G+ I + I + K I + P PKTVK+ R L M+ + + +K P ++++ Sbjct: 729 KTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFI 878
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14 Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEV-RSLSMLVFIDVSLNILAKFLDPYKIYL 456 KT F P G + Y M FGL NAP+TF R + F + RF+ V+++D +F +S + HL VL+R +NL++ KC F ++ G+ I + I + K I + P PKTVK+ R L M+ + + +K P ++++ Sbjct: 703 KTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFI 852
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13 Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 396 FYRRFIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHV-IYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 + R+FI S+++ PL NLL KDV + + + A E +KQ L S P+++ ++S L DA + A+GAVL Q+ D + + Y S ++ A LNYS + KEMLA++ +L+ +R YL Sbjct: 651 YLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770 HSP 2 Score: 68.1662 bits (165), Expect = 5.851e-11 Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVRSLSMLVFIDVSLNILAKFL 435 K F CP G F Y M +G+ APA FQ I +I + E + +M++ + S + H+ VLQ+ NL++N KC F Q G+ IS KG + D + PK KE+R F+ S+N L KF+ Sbjct: 519 KLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQ-----FLG-SVNYLRKFI 656
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13 Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 396 FYRRFIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHV-IYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 + R+FI S+++ PL NLL KDV + + + A E +KQ L S P+++ ++S L DA + A+GAVL Q+ D + + Y S ++ A LNYS + KEMLA++ +L+ +R YL Sbjct: 651 YLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770 HSP 2 Score: 68.1662 bits (165), Expect = 5.851e-11 Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVRSLSMLVFIDVSLNILAKFL 435 K F CP G F Y M +G+ APA FQ I +I + E + +M++ + S + H+ VLQ+ NL++N KC F Q G+ IS KG + D + PK KE+R F+ S+N L KF+ Sbjct: 519 KLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQ-----FLG-SVNYLRKFI 656
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13 Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 396 FYRRFIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHV-IYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 + R+FI S+++ PL NLL KDV + + + A E +KQ L S P+++ ++S L DA + A+GAVL Q+ D + + Y S ++ A LNYS + KEMLA++ +L+ +R YL Sbjct: 651 YLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770 HSP 2 Score: 70.4774 bits (171), Expect = 1.179e-11 Identity = 48/144 (33.33%), Postives = 67/144 (46.53%), Query Frame = 1 Query: 4 KTIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDKAKADLISNLPPPKTVKEVRSLSMLVFIDVSLNILAKFL 435 K F CP G F Y M +G+ APA FQ I +I E + +M+D + S + H+ VLQ+ NL++N KC F Q G+ IS KG + D + PK KE+R F+ S+N L KF+ Sbjct: 519 KLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQ-----FLG-SVNYLRKFI 656 The following BLAST results are available for this feature:
BLAST of CX077939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX077939 ID=CX077939; Name=CX077939; organism=Citrus sinensis; type=EST; length=774bpback to top |