CX077935

Overview
NameCX077935
Unique NameCX077935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13 contig Csv1_Contig13:1138..1662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX077935 vs. ExPASy Swiss-Prot
Match: PFPA_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.313e-53
Identity = 98/122 (80.33%), Postives = 116/122 (95.08%), Query Frame = -1 
Query:  160 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSAS 525
            MTVKRW+QNPGA+SIG+PAI+PA VD++GKAYELLR NA +FL+DDLYRNPGP+QF+GPGADAK +TLCVED+DYMGRIK+LQ+YLD+VRTIVKPGCSQEVLKAALSVMASVT+VL  MS++
Sbjct:  488 MTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLLTMSST 609
[Close]
BLAST of CX077935 vs. ExPASy Swiss-Prot
Match: PFPA_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.310e-48
Identity = 91/127 (71.65%), Postives = 112/127 (88.19%), Query Frame = -1 
Query:  145 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASGGQTT 525
            MTVKR+ + PG +SIG PA++PATVD+RGK+YELL QNAT+FLLDD+YRNPGP+QFDGPGADAKA +L VED DY+G IK+LQ+YLD+VRTIVKPGCSQ+VLKAALS MASVT++LS +S+    +T
Sbjct:  488 MTVKRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVEDADYIGAIKKLQEYLDKVRTIVKPGCSQDVLKAALSAMASVTDILSVISSPSSVST 614
The following BLAST results are available for this feature:
BLAST of CX077935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PFPA_RICCO1.313e-5380.33Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_SOLTU6.310e-4871.65Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H08-O15-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077935 ID=CX077935; Name=CX077935; organism=Citrus sinensis; type=EST; length=525bp
TTTTTTTAACAAAAGAGAATGAACTCAATTCATTACTACCAATACACAGT
AAATGGCTTGGCAAAAGAAGAAGAAAGCAAGCATAATCAGCTAAGTTGTC
TTAAAGAAGAAAGCAAAGCATAATCAGCCAACTTCGTCTTAAAGTGTTGT
CTGGCCTCCAGATGCAGACATTGCTGAGAGAACTTCCGTCACAGAAGCCA
TAACACTCAAAGCTGCTTTCAGTACCTCTTGTGAACAACCTGGTTTCACT
ATGGTTCGAACCTCGTCTAGATACTTCTGCAGTTCCTTAATACGGCCCAT
GTAATCCCGGTCTTCAACACACAGAGTTACAGCCTTAGCATCTGCACCAG
GACCATCAAACTGAACGGGTCCAGGATTTCTGTAGAGGTCGTCCAACAAG
AATCTTGTTGCATTTTGTCTCAAGAGCTCATAAGCTTTGCCTCTCATATC
CACAGTAGCGGGGTTAATAGCCGGTCGTCCAATTGAAGAAGCACCCGGAT
TTTGAGACCAACGTTTTACAGTCAT
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