CX077934

Overview
NameCX077934
Unique NameCX077934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13 contig Csv1_Contig13:1112..1661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX077934 vs. ExPASy Swiss-Prot
Match: PFPA_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.902e-54
Identity = 99/127 (77.95%), Postives = 118/127 (92.91%), Query Frame = 3 
Query:   12 PRPPLMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSAS 392
            P   +MTVKRW+QNPGA+SIG+PAI+PA VD++GKAYELLR NA +FL+DDLYRNPGP+QF+GPGADAK +TLCVED+DYMGRIK+LQ+YLD+VRTIVKPGCSQEVLKAALSVMASVT+VL  MS++
Sbjct:  483 PIAAMMTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLLTMSST 609
[Close]
BLAST of CX077934 vs. ExPASy Swiss-Prot
Match: PFPA_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.356e-48
Identity = 92/132 (69.70%), Postives = 114/132 (86.36%), Query Frame = 3 
Query:   12 PRPPLMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASGGQTT 407
            P   +MTVKR+ + PG +SIG PA++PATVD+RGK+YELL QNAT+FLLDD+YRNPGP+QFDGPGADAKA +L VED DY+G IK+LQ+YLD+VRTIVKPGCSQ+VLKAALS MASVT++LS +S+    +T
Sbjct:  483 PISAMMTVKRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVEDADYIGAIKKLQEYLDKVRTIVKPGCSQDVLKAALSAMASVTDILSVISSPSSVST 614
The following BLAST results are available for this feature:
BLAST of CX077934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PFPA_RICCO4.902e-5477.95Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_SOLTU2.356e-4869.70Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_5H08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H08-O15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077934 ID=CX077934; Name=CX077934; organism=Citrus sinensis; type=EST; length=550bp
GAATTGGGGTACCGCGGCCCCCCCTGATGACTGTAAAACGTTGGTCTCAA
AATCCGGGTGCTTCTTCAATTGGACGACCGGCTATTAACCCCGCTACTGT
GGATATGAGAGGCAAAGCTTATGAGCTCTTGAGACAAAATGCAACAAGAT
TCTTGTTGGACGACCTCTACAGAAATCCTGGACCCGTTCAGTTTGATGGT
CCTGGTGCAGATGCTAAGGCTGTAACTCTGTGTGTTGAAGACCGGGATTA
CATGGGCCGTATTAAGGAACTGCAGAAGTATCTAGACGAGGTTCGAACCA
TAGTGAAACCAGGTTGTTCACAAGAGGTACTGAAAGCAGCTTTGAGTGTT
ATGGCTTCTGTGACGGAAGTTCTCTCAGCAATGTCTGCATCTGGAGGCCA
GACAACACTTTAAGACGAAGTTGGCTGATTATGCTTTGCTTTCTTCTTTA
AGACAACTTAGCTGATTATGCTTGCTTTCTTCTTCTTTTGCCAAGCCATT
TACTGTGTATTGGTAGTAATGAATTGAGTTCATTCTCTTTTGTTAAAAAA
back to top