CX077932

Overview
NameCX077932
Unique NameCX077932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4901 contig Csv1_Contig4901:1..868. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_ARATH (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=1 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 2.069e-95
Identity = 168/172 (97.67%), Postives = 169/172 (98.26%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            WHFHYKKN IPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPE+DLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFM
Sbjct:   62 WHFHYKKNAIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFM 233          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_OENBE (Cytochrome c oxidase subunit 2 OS=Oenothera bertiana GN=COX2 PE=3 SV=3)

HSP 1 Score: 343.199 bits (879), Expect = 1.135e-93
Identity = 163/172 (94.77%), Postives = 169/172 (98.26%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            WHF+YKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPA+T+KAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVP KT+LR+IVTSADVLHSWAVPSLGVKCDAVPGRLNQIS+ VQREGVYYGQCSEICGTNHAFM
Sbjct:   62 WHFYYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAMTLKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPVKTNLRLIVTSADVLHSWAVPSLGVKCDAVPGRLNQISMLVQREGVYYGQCSEICGTNHAFM 233          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COXT_SOYBN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Glycine max GN=COX2 PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.796e-92
Identity = 159/172 (92.44%), Postives = 166/172 (96.51%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            WHF  K NPIPQRIVHGTTIEILWTIFPS+ILMFIAIPSFALLYSMD++VVDPAITIKAIGHQWYWTYEYSDYN+SDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR+I+TSADVLHSWAVPSLGVKCDAVPGRLNQIS  +QREGVYYGQCSEICGTNHAFM
Sbjct:  202 WHFRSKMNPIPQRIVHGTTIEILWTIFPSVILMFIAIPSFALLYSMDDIVVDPAITIKAIGHQWYWTYEYSDYNNSDEQSLAFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRVIITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFM 373          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_MARPO (Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha GN=COX2 PE=3 SV=3)

HSP 1 Score: 336.65 bits (862), Expect = 1.063e-91
Identity = 159/172 (92.44%), Postives = 167/172 (97.09%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            WHFHYK+NPIP+RIVHGTTIEI+WTIFPSIILMFIAIPSFALLYSMDEVV DPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR+I+TSADVLHSWAVPSLGVKCDAVPGRLNQ SI ++REGVYYGQCSE+CGTNH FM
Sbjct:   60 WHFHYKRNPIPERIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVV-DPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRMIITSADVLHSWAVPSLGVKCDAVPGRLNQTSIFIKREGVYYGQCSELCGTNHGFM 230          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_MAIZE (Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2 PE=2 SV=4)

HSP 1 Score: 331.643 bits (849), Expect = 3.418e-90
Identity = 158/172 (91.86%), Postives = 165/172 (95.93%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            WHF+ + NPIPQRIVHGTTIEI+WTIFPS+IL+FIAIPSFALLYSMD V+VDPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR+IVTSADVLHSWAVPSLGVKCDAVPGRLN  SI VQREGVYYGQCSEICGTNHAFM
Sbjct:   64 WHFNEQTNPIPQRIVHGTTIEIIWTIFPSVILLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRMIVTSADVLHSWAVPSLGVKCDAVPGRLNLTSILVQREGVYYGQCSEICGTNHAFM 235          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_SOYBN (Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 4.464e-90
Identity = 163/171 (95.32%), Postives = 163/171 (95.32%), Query Frame = -2
Query:  307 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 819
            WHFHYKKNPIPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMDEVVVDPAITIKAIGHQWY TYEYSDYNSSDEQSL FDSY IPEDDLELGQ RLLEVDNRVVVPAKTHLRIIVT ADV HSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF
Sbjct:   61 WHFHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 231          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_BETVU (Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.779e-89
Identity = 160/172 (93.02%), Postives = 163/172 (94.77%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            WHFHYKKNPIPQRIVHGTTIEI+ TIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWY +YEYSDYNSSDEQSL FDSY IPEDD ELGQ RLLEVDNRVVVPAKTH+RIIVTSADVLHSWAVPS GVKCDAVPGRLNQ SI VQREGVYYGQCSEICGTNHAFM
Sbjct:   62 WHFHYKKNPIPQRIVHGTTIEIIRTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHIRIIVTSADVLHSWAVPSSGVKCDAVPGRLNQTSILVQREGVYYGQCSEICGTNHAFM 233          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_VIGUN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Vigna unguiculata GN=COX2 PE=2 SV=2)

HSP 1 Score: 325.865 bits (834), Expect = 1.876e-88
Identity = 154/172 (89.53%), Postives = 163/172 (94.77%), Query Frame = -2
Query:  304 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 819
            W F  K +PIPQRIVHGTTIEILWTI PSIILMFIAIPSF LLYSMD+VVVDPAITIKAIGHQWYW+YEYSDYN+SDEQSL FDSYM+PEDDLELGQLRLLEVDNRVVVPAKTHLR+++TSADVLHSWAVPSLGVKCDAVPGRLNQIS  +QREGVYYGQCSEICGTNHAFM
Sbjct:  184 WCFRSKISPIPQRIVHGTTIEILWTILPSIILMFIAIPSFTLLYSMDDVVVDPAITIKAIGHQWYWSYEYSDYNNSDEQSLAFDSYMVPEDDLELGQLRLLEVDNRVVVPAKTHLRVLITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFM 355          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_PEA (Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 9.309e-88
Identity = 159/171 (92.98%), Postives = 161/171 (94.15%), Query Frame = -2
Query:  307 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 819
            WHFHYKKNPIPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMD V+VDPA+TIKAIGHQWY TYEYSDYNSSDEQSL FDSY IPEDDLELGQ  LLEVDNRVVVPAKTHLRIIVT ADV HSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF
Sbjct:   61 WHFHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDGVLVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 231          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.309e-88
Identity = 160/171 (93.57%), Postives = 161/171 (94.15%), Query Frame = -2
Query:  307 WHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 819
            WHFH KKNPIPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWY TYEYSDYNSSDEQSL FDSY IPEDD ELGQ RLLEVDNRVVVPAKTHLRIIVTSADV HSWAVPS GVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF
Sbjct:   63 WHFHSKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 233          
The following BLAST results are available for this feature:
BLAST of CX077932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_ARATH2.069e-9597.67Cytochrome c oxidase subunit 2 OS=Arabidopsis thal... [more]
COX2_OENBE1.135e-9394.77Cytochrome c oxidase subunit 2 OS=Oenothera bertia... [more]
COXT_SOYBN2.796e-9292.44Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]
COX2_MARPO1.063e-9192.44Cytochrome c oxidase subunit 2 OS=Marchantia polym... [more]
COX2_MAIZE3.418e-9091.86Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2... [more]
COX2_SOYBN4.464e-9095.32Cytochrome c oxidase subunit 2 OS=Glycine max GN=C... [more]
COX2_BETVU3.779e-8993.02Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN... [more]
COX2_VIGUN1.876e-8889.53Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]
COX2_PEA9.309e-8892.98Cytochrome c oxidase subunit 2 OS=Pisum sativum GN... [more]
COX2_DAUCA9.309e-8893.57Cytochrome c oxidase subunit 2 OS=Daucus carota GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5H07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H07-O13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077932 ID=CX077932; Name=CX077932; organism=Citrus sinensis; type=EST; length=868bp
TACCGCGGCCCCCCCTCGAGTGCCAGCCGCAGAGAGGAATGCCATCAACT
AGGGCGCTATTGGCCACTAACCACTCGCTCGCCGGCCGTTCGGGCTCCGC
GTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCGGGAGCCTGG
CCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCCCTACAGCTC
CAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCACCCCGGGTG
GTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTTTCCGGGCGC
ACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACTGACCATAGT
AAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAACGACCAGGT
ACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACTATGAAGTAC
ATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTGGTACAACCA
CTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCTAGATCATCT
TCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATCGGAACTGTT
ATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAATAGCTTTGA
TAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTATAACAGAGCA
AATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAAGATGGTCCA
AAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGATTGGATTTT
TTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGTAATACGAAA
ACCAAAATCAGAATGAGA
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