CX077923

Overview
NameCX077923
Unique NameCX077923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4900 contig Csv1_Contig4900:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX077923 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-27
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = -1 
Query:  415 FYYIRLAKRMFFDTPRTWILYEPMDRNKSLLLAMTSSFITSFFLYPSPLFSVTHQMALSSYL 600
            FYYIRL KRMFFDTPRTWILYEPMDRNKSLLLAMTSSFIT FFLYPSPLFSVTHQMALS YL
Sbjct:  427 FYYIRLVKRMFFDTPRTWILYEPMDRNKSLLLAMTSSFITLFFLYPSPLFSVTHQMALSLYL 488
[Close]
BLAST of CX077923 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = -1 
Query:  415 FYYIRLAKRMFFDTPRTWILYEPMDRNKSLLLAMTSSFITSFFLYPSPLFSVTHQMALSSYL 600
            FYYIRL KRMFFDTPRTWILYEPMDRNKSLLLAMTS FIT F LYPSPLFSVTHQMALS YL
Sbjct:  438 FYYIRLVKRMFFDTPRTWILYEPMDRNKSLLLAMTSFFITLFLLYPSPLFSVTHQMALSLYL 499
[Close]
BLAST of CX077923 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = -1 
Query:  427 LGFGVDPFTLFYYIRLAKRMFFDTPRTWILYEPMDRNKSLLLAMTSSFITSFFLYPSPLFSVTHQMAL 630
            +G      + FYYIR  K M+FDTP+TW+LY+PMDR KSLLLA+T  FIT FFLYPSPLF VTHQMAL
Sbjct:  418 IGVVTSVISCFYYIRFVKIMYFDTPKTWVLYKPMDREKSLLLAITVFFITFFFLYPSPLFLVTHQMAL 485
The following BLAST results are available for this feature:
BLAST of CX077923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NU2M_OENBE1.912e-2795.16NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_ARATH4.709e-2691.94NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_MARPO2.956e-2067.65NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_5H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H01-O1-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077923 ID=CX077923; Name=CX077923; organism=Citrus sinensis; type=EST; length=750bp
TTCAATCTGAACGGTAAGGGCCCTGACAATACAATTATATCATATGCTAA
CTCGTTTGGAGTTAAAGGTTGCTGACCTATTGCCAACTCGAAAAGGCTAG
CTCCAGTAGAAAAACTCAGTTTAAGGTTATAACAGAATTTGGCAATATCC
AAAAGATCAACCCAATTTGTTGATTGGCCGCAATCAAATGTCTCAAATAT
TCTTCTAAGAAACCATTCACACGTTCTGTCTGCCCGGTTAGTCGTAAAGA
AGTTGAGTTTAGTTCCCTCAAACAAAGACGTCCAAAAACGTCCTGTGAAC
CGAGCATCCCGATCACTCACCACATCAGCCGGTATTCTCCAGTACTTTAC
AACATTCTTGAAGAATAGATCTGCGGCCCACCCTTTCTTTGAACCTTGTC
AATGATCGAACTTAAAGATATGAACTGAGTGCCATTTGATGAGTAACTGA
GAACAAGGGAGAGGGATATAGAAAGAATGAAGTAATGAAAGAGGAAGTCA
TTGCTAGTAGTAACGACTTGTTACGATCCATTGGTTCATATAGAATCCAT
GTCCTAGGTGTATCAAAAAACATTCTTTTCGCTAAGCGTATATAATAAAA
TAGAGTGAAAGGGTCCACCCCGAAACCAAGGGGGTACTAACTAAGAGCTG
AGTCCTCTCCGAACCGCAGGAGATAGTTGCCCATCATACGGCTCACCAAC
TTAACTTGCCTCTATGGGAGGCTCGCTCCGGGCAGGTTCGGATCACTTAC
back to top