CX077912

Overview
NameCX077912
Unique NameCX077912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX077912_ssr365 microsatellite CX077912_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4059 contig Csv1_Contig4059:23..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX077912 vs. ExPASy Swiss-Prot
Match: AMP22_MACIN (Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 48/184 (26.09%), Postives = 78/184 (42.39%), Query Frame = -1 
Query:  315 YNLYNRNPDFKNNYGWSXAVDDSDYSPLRHSGIGVYLVNLTAGSMMAPHVNPTATEYGIVLRGSGRIQIVYPN------GTAAMSRKVSEGDV--------------FVVPRYFAFCQISSRTGPFEFFGFTTSARKNRPQFLVGAS-SLLRTLPNPELAVAFGVSEYRLRNFTDAQREAVILP 803
            YNL+N+ P + N YG +  V   DY  L+   + V++ N+T GSMM P  N  +T+  +V  G   +++  P+      G     R   E DV               VVP       +SS       F F  +A+ N   FL G   ++L+ +    + +AF      +    ++Q E++  P
Sbjct:  455 YNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRRGGKRHEEEEDVHYEQVKARLSKREAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAAPRKEVEELFNSQDESIFFP 638
[Close]
BLAST of CX077912 vs. ExPASy Swiss-Prot
Match: AMP23_MACIN (Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 46/184 (25.00%), Postives = 80/184 (43.48%), Query Frame = -1 
Query:  315 YNLYNRNPDFKNNYGWSXAVDDSDYSPLRHSGIGVYLVNLTAGSMMAPHVNPTATEYGIVLRGSGRIQIVYPN------GTAAMSR--------------KVSEGDVFVVPRYFAFCQISSRTGPFEFFGFTTSARKNRPQFLVGAS-SLLRTLPNPELAVAFGVSEYRLRNFTDAQREAVILP 803
            YNL+N+ P + N YG +  V   DY  L+   + V++ N+T GSMM P  N  +T+  +V  G   +++  P+      G     R              ++S+ +  VV        +SS       F F  +A+ N   FL G   ++L+ +    + +AF  S   +    ++Q E++  P
Sbjct:  414 YNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGGGKRHEEEEEVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAASRKEVEELFNSQDESIFFP 597
The following BLAST results are available for this feature:
BLAST of CX077912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AMP22_MACIN4.477e-1226.09Vicilin-like antimicrobial peptides 2-2 OS=Macadam... [more]
AMP23_MACIN1.303e-1125.00Vicilin-like antimicrobial peptides 2-3 (Fragment)... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_5G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5G07-M13-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077912 ID=CX077912; Name=CX077912; organism=Citrus sinensis; type=EST; length=821bp
TTTTAAAACAGTAGTTCCGTTTTATTCACAAAATCAAAATTCATGGGCAA
GAAACCCCTCCATGAAAGAGCTAAAATGCAGGGAAAAAAAAAGGCACTAA
ATAAAACAAAACAATAAACAAAAACCGAACACAAAGCACAGCTTCCGCAA
CCAGCTTAATTTCCAAGCAAACTCACATCTGATCGTCTTATTGAGCAGCT
AAATCAATCAAACCCCATAATCATATCATTACCAAAGTTCTTAATCACCC
TCGGCACCTTATCAAATTCAGTCCTCATCTTCTCTTTCTTATCCGGCTGC
GCCACGCCCGCTGTTGGCAAGATAACAGCTTCACGCTGAGCATCAGTAAA
GTTTCTAAGCCTATACTCACTCACTCCGAAAGCAACTGCAAGCTCAGGAT
TAGGCAGAGTTCGGAGAAGTGAGCTTGCACCCACAAGGAACTGCGGCCTG
TTCTTGCGCGCTGATGTGGTGAATCCAAAGAACTCAAACGGCCCTGTTCT
TGATGAAATCTGGCAGAAAGCAAAGTACCTCGGTACCACAAACACGTCCC
CTTCACTCACTTTTCTGCTCATCGCTGCCGTTCCGTTTGGATAAACAATC
TGAATTCTTCCACTTCCCCTCAGTACAATGCCGTATTCCGTTGCTGTCGG
ATTCACATGTGGCGCCATCATCGACCCCGCGGTGAGATTGACAAGATAAA
CACCGATGCCAGAGTGTCTGAGAGGGGAATAATCGGAGTCATCGACGGCN
ATGCTCCATCCATAGTTGTTCTTAAAGTCAGGGTTTCGGTTGTAGAGGTT
GTATGAATCTGGTGCTTTTCG
back to top