CX077911

Overview
NameCX077911
Unique NameCX077911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX077911_ssr558 microsatellite CX077911_ssr558:558..569. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4059 contig Csv1_Contig4059:73..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077911 vs. ExPASy Swiss-Prot
Match: AMP22_MACIN (Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 50/193 (25.91%), Postives = 81/193 (41.97%), Query Frame = 2
Query:  104 RGTRKAPDSYNLYNRNPDFKNNYGWSIAVDDSDYSPLRHSGIGVYLVNLTAGSMMAPHVNPTATEYGIVLRGSGRIQIVYPN------GTAAMSRKVSEGDV--------------FVVPRYFAFCQISSRTGPFEFFGFTTSARKNRPQFLVGAS-SLLRTLPNPELAVAFGVSEYRLRNFTDAQREAVILP 619
            RG   +   YNL+N+ P + N YG +  V   DY  L+   + V++ N+T GSMM P  N  +T+  +V  G   +++  P+      G     R   E DV               VVP       +SS       F F  +A+ N   FL G   ++L+ +    + +AF      +    ++Q E++  P
Sbjct:  446 RGGESSRGPYNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRRGGKRHEEEEDVHYEQVKARLSKREAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAAPRKEVEELFNSQDESIFFP 638          
BLAST of CX077911 vs. ExPASy Swiss-Prot
Match: LEGB_GOSHI (Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 70/222 (31.53%), Postives = 101/222 (45.50%), Query Frame = 2
Query:   20 EQDEDGEEIKWSWRKLLTSVFGTENKKE---RGTRKAPD-------SYNLYNRNP----DFKNNYGWSIAVDDSDYSP-LRHSGIGVYLVNLTAGSMMAPHVNPTATEYGIVLRGSGRIQIVYPNGTAAMSRKVSEGDVFVVPRYFAFCQISSRTGPFEFFGFTTSARKNRPQFLVGASSLLRTLPNPELAVAFGVS-EYRLRNFTDAQREAVILPTAGVAQ 637
            E+ E+  E KW  R+        E ++E   RG R++ +       S  L +R P    D  N  G  I   +S   P L++  +      L   ++ APH N  A     + RG+GRIQIV  NG A    +V  G V  VP+  A  + + R G FE+  F T+A     Q + G  S++R LP   LA +FG+S E  +R   + Q  +V  P  G  Q
Sbjct:  297 EEGEEEREPKWQRRQESQEEGSEEEEREERGRGRRRSGNGLEETFCSMRLKHRTPASSADVFNPRGGRITTVNSFNLPILQYLQLSAERGVLYNNAIYAPHWNMNAHSIVYITRGNGRIQIVSENGEAIFDEQVERGQVITVPQNHAVVKKAGRRG-FEWIAFKTNANAKISQ-IAGRVSIMRGLPVDVLANSFGISREEAMRLKHNRQEVSVFSPRQGSQQ 516          
BLAST of CX077911 vs. ExPASy Swiss-Prot
Match: AMP23_MACIN (Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 48/193 (24.87%), Postives = 83/193 (43.01%), Query Frame = 2
Query:  104 RGTRKAPDSYNLYNRNPDFKNNYGWSIAVDDSDYSPLRHSGIGVYLVNLTAGSMMAPHVNPTATEYGIVLRGSGRIQIVYPN------GTAAMSR--------------KVSEGDVFVVPRYFAFCQISSRTGPFEFFGFTTSARKNRPQFLVGAS-SLLRTLPNPELAVAFGVSEYRLRNFTDAQREAVILP 619
            RG   +   YNL+N+ P + N YG +  V   DY  L+   + V++ N+T GSMM P  N  +T+  +V  G   +++  P+      G     R              ++S+ +  VV        +SS       F F  +A+ N   FL G   ++L+ +    + +AF  S   +    ++Q E++  P
Sbjct:  405 RGGESSRGPYNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGGGKRHEEEEEVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAASRKEVEELFNSQDESIFFP 597          
BLAST of CX077911 vs. ExPASy Swiss-Prot
Match: AMP21_MACIN (Vicilin-like antimicrobial peptides 2-1 OS=Macadamia integrifolia GN=AMP2-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 48/193 (24.87%), Postives = 80/193 (41.45%), Query Frame = 2
Query:  104 RGTRKAPDSYNLYNRNPDFKNNYGWSIAVDDSDYSPLRHSGIGVYLVNLTAGSMMAPHVNPTATEYGIVLRGSGRIQIVYPN------GTAAMSRKVSEGDV--------------FVVPRYFAFCQISSRTGPFEFFGFTTSARKNRPQFLVGAS-SLLRTLPNPELAVAFGVSEYRLRNFTDAQREAVILP 619
            RG   +   YNL+N+ P + N YG +  V   DY  L+   + V++ N+T GSMM P  N  +T+  +V  G   +++  P+      G     R   E DV               VV        +SS       F F  +A+ N   FL G   ++L+ +    + +AF      +    ++Q +++  P
Sbjct:  446 RGGESSRGPYNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDLSVFIANVTQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGGGKRHEEEEDVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAAPRKEVEESFNSQDQSIFFP 638          
The following BLAST results are available for this feature:
BLAST of CX077911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AMP22_MACIN1.012e-1225.91Vicilin-like antimicrobial peptides 2-2 OS=Macadam... [more]
LEGB_GOSHI1.322e-1231.53Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1[more]
AMP23_MACIN2.945e-1224.87Vicilin-like antimicrobial peptides 2-3 (Fragment)... [more]
AMP21_MACIN4.252e-1124.87Vicilin-like antimicrobial peptides 2-1 OS=Macadam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5G07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5G07-M13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077911 ID=CX077911; Name=CX077911; organism=Citrus sinensis; type=EST; length=883bp
CTGGGAGCCCCACCCTCGAGAACAAGATGAAGACGGAGAAGAAATAAAAT
GGTCATGGAGGAAACTCTTGACGTCAGTATTCGGGACCGAAAACAAGAAA
GAACGAGGAACCCGAAAAGCACCAGATTCATACAACCTCTACAACCGAAA
CCCTGACTTTAAGAACAACTATGGATGGAGCATTGCCGTCGATGACTCCG
ATTATTCCCCTCTCAGACACTCTGGCATCGGTGTTTATCTTGTCAATCTC
ACCGCGGGGTCGATGATGGCGCCACATGTGAATCCGACAGCAACGGAATA
CGGCATTGTACTGAGGGGAAGTGGAAGAATTCAGATTGTTTATCCAAACG
GAACGGCAGCGATGAGCAGAAAAGTGAGTGAAGGGGACGTGTTTGTGGTA
CCGAGGTACTTTGCTTTCTGCCAGATTTCATCAAGAACAGGGCCGTTTGA
GTTCTTTGGATTCACCACATCAGCGCGCAAGAACAGGCCGCAGTTCCTTG
TGGGTGCAAGCTCACTTCTCCGAACTCTGCCTAATCCTGAGCTTGCAGTT
GCTTTCGGAGTGAGTGAGTATAGGCTTAGAAACTTTACTGATGCTCAGCG
TGAAGCTGTTATCTTGCCAACAGCGGGCGTGGCGCAGCCGGATAAGAAAG
AGAAGATGAGGACTGAATTTGATAAGGTGCCGAGGGTGATTAAGAACTTT
GGTAATGATATGATTATGGGGTTTGATTGATTTAGCTGCTCAATAAGACG
ATCAGATGTGAGTTTGCTTGGAAATTAAGCTGGTTGCGGAAGCTGTGCTT
TGTGTTCGGTTTTTGTTTATTGTTTTGTTTTATTTAGTGCCTTTTTTTTT
CCCTGCATTTTAGCTCTTTCATGGAGGGGTTTC
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