CX077909

Overview
NameCX077909
Unique NameCX077909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX077909_ssr718 microsatellite CX077909_ssr718:718..743. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX077909 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 2
Query:  527 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 679
            VVDETDRLLREAYQ+WLPTVLQLT++ +++ F   + F+PSAFGSL+T+RR
Sbjct:  195 VVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRR 245          
The following BLAST results are available for this feature:
BLAST of CX077909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RH1_ARATH1.993e-1368.63DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5G06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5G06-M11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077909 ID=CX077909; Name=CX077909; organism=Citrus sinensis; type=EST; length=872bp
CATCTCTGTTACCTTGTAAGTTGCCTACCCCTATAACTTACACGAATACA
CTGCAATGCTAAAGCTCTAGTTAAGTATAAACTTACTAAATTCATTTGTT
TCCAATTGCCCAACCAGGCCTACTTTGATGGTGTGCTTTGCAGATGCATT
GATTCTACAAGTGTTTTGAACATTGTTTATCTTATGCTAACTTTATCAAG
AGTCTTGGCAAATTCCATGTTGATATGTACTGCGAAGTTTGTTCCGATTA
ATTTTGTTATTAAGTTACTTTCATTGATTCACAGTACCATGTGTTCATAT
ATCTGGCTCATCCAGTTGGACATTTCTTTTATCCATTAATTGGTTGCCGC
ACCAAACAGAATATGAATTGTATTTCATAGGTATACTTATTTTAGGACCA
TTCATCTGTGGAAAATCACATTCAACTATTGTGACCAGACCAAGCCCTAG
CCAATTATCTTGGCATACTCCAATATAGATCATTTTGTTTGCAGTAAATC
AGACTCTGATTATTTTTGTTACTCAGGTTGTTGACGAAACTGATCGATTG
CTTAGGGAGGCATATCAGGCTTGGCTGCCCACTGTGCTCCAATTAACTCG
ATCTGATAATGAAAACCGCTTTTCTGATGCAAGTACTTTTCTGCCTTCAG
CATTTGGCTCTTTAAAAACCATAAGAAGATGGTGAGTGCTATGTTGATTT
ACTTCCCTTTCCTTTAGATATATATATATATATATATATATATAGCAACC
TGCTGGTGGTTTCAAGTACCAAACTGTGTTGATGTTGGAACTTGGGACCA
GTGCTCGGTGCTCTGCAAACGCCTATAAATGAAGTAACTAAATGACTAAT
GTGAATCATCAGTATTTATTAA
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