EY688520

Overview
NameEY688520
Unique NameEY688520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:352..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY688520 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.038e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    3 FEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 110
            FEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:   87 FEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of EY688520 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.038e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    3 FEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 110
            FEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:   87 FEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
The following BLAST results are available for this feature:
BLAST of EY688520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RS242_ARATH6.038e-1394.4440S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS241_ARATH6.038e-1394.4440S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-072-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688520 ID=EY688520; Name=EY688520; organism=Citrus sinensis; type=EST; length=376bp
AGTTTGAGCCCAAGTACAGGCTTATCAGGAATGGACTTGATACCAAGGTA
GAGAAGTCAAGGAAGCAGATGAAGGAAAGGAAGAACAGGGCTAAGAAGAT
CCGTGGTGTAAAGAAGACCAAGGCCTCAGATGCTGCCAAGAAGAAGTGAG
CAATTGGAGATTCTTCTGTAGTCTCGAAGCCAATTTTCTGTGATGGAGTT
TCTATAATAGTCTTTTTTTTTTTTGGTTTAGTTCCTGAAATGAAATCTAG
TGTGTTGTGGATTTTGGTGCCATTGGATGTTTAGTTATATTTGCAGATTT
TGAGTACTCCCCGAAAGACATTTTTGAGTATTGAATGGCAATACATTCGA
CTTTAACCCTGAAAAAAAAAAAAAAA
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