EY688485

Overview
NameEY688485
Unique NameEY688485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688485_ssr450 microsatellite EY688485_ssr450:450..461. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:168..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  109 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            P T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P + GVSIPYKISP+TDCS+V+
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.708e-31
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  124 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP + GVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  109 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP + GV+IPY+ISP+T+C+ V+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  109 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP + GV++PYKISP+T+C+ V+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 1
Query:  112 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP + GV++PYKIS +T+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  124 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            ITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP + GV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  124 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP + GV+IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.189e-27
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  124 ITCGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRV 396
            +TCGQVTG+LAPC+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP + GV+IPYKISP TDC+RV
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.189e-27
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  124 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            ITCGQV+ +LAPCI +++ GG  PP  CCNG+R++N  ARTT DR+AACNCLKQ   SIPG+N N AA LP + GV++PYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of EY688485 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.047e-26
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 1
Query:  112 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQ*GVSIPYKISPNTDCSRVR 399
            V +AITC QV+ +LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP + GV++PYKIS +T+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of EY688485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_HELAN9.487e-3265.98Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI4.708e-3169.57Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDU6.149e-3161.86Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV1.789e-3059.79Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO1.515e-2962.50Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE1.675e-2863.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR2.418e-2761.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_DAUCA9.189e-2760.87Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUDO9.189e-2759.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO2.047e-2655.21Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-072-D06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688485 ID=EY688485; Name=EY688485; organism=Citrus sinensis; type=EST; length=636bp
AACAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAAT
CCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGG
TGACTGCCCCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCC
TTGGCTCCATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACC
CCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCC
CTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATC
CCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGAGGAGT
CAGCATTCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGT
GAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGA
ATAAATAAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTC
CACTTGTGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAAT
ATCATATTAAATATGTAAACGTGATCTGTGTTTTGAGTGATTAATTCTAG
TTATTTTGTGGTATTATCTTAAAAAAAAAAAAAAAA
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