EY702270

Overview
NameEY702270
Unique NameEY702270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9972 contig Csv1_Contig9972:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702270 vs. ExPASy Swiss-Prot
Match: PPCS_HUMAN (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.461e-51
Identity = 113/245 (46.12%), Postives = 145/245 (59.18%), Query Frame = 1
Query:   28 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLGTDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIQFI 747
            RRV  VTSGGT VPLE R VR++DNFSSG RGA S E  +  GY V+FLYR  +  PY    P   +L     +  +   +    +E         A+R +  A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKIQS  GPL + +  VPK+LS L K+WAP AF ISFKL TD  I++ +A  A + Y    VVAN L SR+  V +VT + + + +
Sbjct:   35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLL 279          
BLAST of EY702270 vs. ExPASy Swiss-Prot
Match: PPCS_MOUSE (Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.492e-51
Identity = 109/245 (44.49%), Postives = 148/245 (60.41%), Query Frame = 1
Query:   28 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLGTDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIQFI 747
            RRV  +TSGGT VPLE R VR++DNFSSG RGAAS E  +  GY V+FLYR  +  PY    P  A+L     +  +     +++  +        A++ +  A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P   M EHKI S  GPL + +  VPKMLS L K+WAP AF +SFKL TD +I++ +A  A + Y    VVAN L S K  V++VT + + + +
Sbjct:   35 RRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVVANILESIKSFVIIVTKDSETELL 279          
BLAST of EY702270 vs. ExPASy Swiss-Prot
Match: YJ2I_SCHPO (Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe GN=SPCC4B3.18 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.117e-46
Identity = 107/244 (43.85%), Postives = 149/244 (61.07%), Query Frame = 1
Query:    7 VRSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG--PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLGTDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTN 726
            +  +S ++ +A VTSGGT VPLEQ  VR+IDNFS+G+RGAAS E+  K GY+VIFLYR  +  P+      P     E    ++E    V Q +   V  A+ +         L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSGSG   L++++  VPK L  L   WAP A  ISFKL TD  IL++KA +A ++Y    V+AN L +RK  V  VT+
Sbjct:   31 INLQSNSQNIAFVTSGGTLVPLEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLSTRKRSVAFVTS 274          
BLAST of EY702270 vs. ExPASy Swiss-Prot
Match: YII3_YEAST (Uncharacterized protein YIL083C OS=Saccharomyces cerevisiae GN=YIL083C PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.124e-35
Identity = 100/255 (39.22%), Postives = 139/255 (54.51%), Query Frame = 1
Query:   31 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQVCQPYSEAV--KRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG-------------------SGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLGTDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVT 723
            ++  +TSGGTTVPLE   VR+IDNFS+G RGA+S E  +  GY+VIFL+R  +  PY  S     +  FL+      +S  ++   ++E V   + + D +      LLL LPFTT+ +YL  L+ IA    + G   +FYLAAAVSDF+VP+  + +HKIQSG                    G L + L  VPK L  L + WA  A  +SFKL TD  +LL K   A  +Y    V+ N L +R +QV+ V+
Sbjct:   74 KIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSFSHSINTLFLDYI----DSEGKIKPEFAENVLKNKKLYDKYMEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG--CLFYLAAAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVS 321          
The following BLAST results are available for this feature:
BLAST of EY702270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPCS_HUMAN1.461e-5146.12Phosphopantothenate--cysteine ligase OS=Homo sapie... [more]
PPCS_MOUSE2.492e-5144.49Phosphopantothenate--cysteine ligase OS=Mus muscul... [more]
YJ2I_SCHPO4.117e-4643.85Uncharacterized protein C4B3.18 OS=Schizosaccharom... [more]
YII3_YEAST1.124e-3539.22Uncharacterized protein YIL083C OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-A05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702270 ID=EY702270; Name=EY702270; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGGTCAGAATCAGGAACAAGAAGAGTGGCGTGTGTGACATC
TGGCGGCACAACTGTGCCACTGGAGCAACGCTGTGTCCGTTATATTGATA
ATTTCAGCTCAGGCCACAGAGGAGCTGCTTCTACTGAGCATTTAATTAAG
ATGGGATATGCTGTTATTTTCTTGTACCGAAGGGGAACTTGCGAGCCATA
TTGCAGTTCTCTCCCTGATGATGCGTTTCTTGAATGTTTTGAGGTCACTG
AGGAGTCAGCAGTTCAAGTCTGCCAACCTTATTCCGAAGCAGTGAAGAGA
GCCATTAGGGATCATCACGCTGCAGTAGCAGGAGGCCTTCTGTTGAAGCT
TCCCTTTACAACTATATTCGAGTATCTTCAGATGCTACAGATGATTGCTG
TATCTTCTAGGAGTCTTGGACCATGTTCTATGTTCTATCTTGCTGCTGCT
GTTTCTGACTTCTATGTCCCATGGAAAAGCATGGCAGAGCACAAGATTCA
GTCAGGTTCTGGCCCTTTGGACATGCAACTTTTGCAGGTGCCAAAAATGC
TCTCAGTTCTCAGGAAAGAATGGGCACCCATGGCCTTCTGCATATCATTT
AAGCTTGGAACAGATGCAGAGATTCTCTTAGAGAAAGCAGATATGGCTCG
GAAAAAGTATGGGATGCATGCAGTTGTCGCCAATGAGCTCTTGTCCCGCA
AGGAGCAGGTTGTAGTTGTCACAAATAATGGGAAAATTCAGTTTATCAAG
ACAAGACGAACTCCGATTCTGATGGAAAAAAGCCCCTGAATAAACTGCTT
GTGGACAGAACTTTCGGTTACCATCAAGGTTCCCAACCCTAGGCAAACAG
CTCCCAAATACCCTTTAAAACTTCTTTAATCCGTGTTGGA
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