EY702269

Overview
NameEY702269
Unique NameEY702269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY702269 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.182e-11
Identity = 33/83 (39.76%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  212 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEDADRCIKHLDRSVLEGRIITVERAK 460
            +EN GN+L+V+G++ R+ + EL++ F+  G V  V ++ +P T+ SRGFGF++ +TVE+A   I +L+     GR++ V++AK
Sbjct:   96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
[Close]
BLAST of EY702269 vs. ExPASy Swiss-Prot
Match: SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:  224 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEDADRCIKHLDRSVLEGRIITVERAK 460
            G NL+V+GLS      +L+  F+  GKVI   +V +  +  +R +GFVTM+T ++A +CI HL R+ L GR+I+VE+AK
Sbjct:  450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAK 528
[Close]
BLAST of EY702269 vs. ExPASy Swiss-Prot
Match: SAFB2_HUMAN (Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.439e-11
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:  224 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEDADRCIKHLDRSVLEGRIITVERAK 460
            G NL+V+GLS      +L+  F+  GKV+   +V +  +  +R +GFVTM+T ++A +CI HL R+ L GR+I+VE+AK
Sbjct:  406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAK 484
The following BLAST results are available for this feature:
BLAST of EY702269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YDC1_SCHPO1.182e-1139.76Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
SAFB2_MOUSE1.543e-1144.30Scaffold attachment factor B2 OS=Mus musculus GN=S... [more]
SAFB2_HUMAN3.439e-1143.04Scaffold attachment factor B2 OS=Homo sapiens GN=S... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-A04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702269 ID=EY702269; Name=EY702269; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGGAGATCGAAAGAGAAGCGAACTCTAACCCAAGGAAGAAT
CTCGAAACACACAGGCAAGAAAGTCGATTTTACAAGTACTTGATACGATG
TCTTACTCTAGGAGGTCAAGGTATTCACGCTCTCCTTCACCATACAATAG
ATACGGCAGGTCAATGTCTAGGTCAATGTCTCGCAGCCGATCAAGGAGCC
GATCGAGTGATGCGGAAAATCCTGGCAACAATTTGTATGTAACAGGATTG
TCACCTCGTATCACCAAAAGAGAACTTGAGAAGCATTTTGCAGCTGAGGG
AAAGGTGATTGATGTTCACCTTGTGGTCGATCCGTGGACAAGAGAGTCTC
GTGGTTTTGGGTTTGTTACGATGGCCACAGTTGAGGATGCTGACCGTTGC
ATCAAGCATTTGGATCGTTCTGTTCTTGAGGGTCGCATCATTACTGTGGA
GAGGGCAAAGAGGCGGAGAGGGCGAACTCCCACTCCAGGAAGGATTTTGG
GGGTGAGAACCATTCGTGTTCGGGGTGGAATCACTAGCAAGTCTCCTCCT
CGTGGATGTCCCAGCTACTCTGCTTATCTTTGGAGCAGAAGCTTTTCTCC
AGGTTATTCGTCTTGACGGGGCAGGGAAGGATATTATTCCCCTTGGTTAT
GGAGGACGGAGGGCCTTGCTCCCGCTATTTGTAGGCCGGGGAAAATATAA
ATCGGTGTGAGAAGGCCGGGGCCCGTTCCTCATCCCGTGCCCGCCCCCCC
TCGTGGTAGTGCTCCCAATGGGCCCCCCGGTTACGGAGGGGGTAGCCGCT
TTTTCCTTCCCTAATGTCCCTCTAATTTATGTACTGTTCCTTACTGAGGG
CGGGTTGTTATATTTCCTCTTGTTTGCTCCCAAATAGTGGGCCGCTCCTT
TGGGGGGCCTGTT
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