EY702254

Overview
NameEY702254
Unique NameEY702254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2086 contig Csv1_Contig2086:71..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702254 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.489e-57
Identity = 111/153 (72.55%), Postives = 130/153 (84.97%), Query Frame = 2
Query:  134 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 589
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 156          
BLAST of EY702254 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.733e-47
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  203 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 589
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP 164          
BLAST of EY702254 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 89/135 (65.93%), Postives = 105/135 (77.78%), Query Frame = 2
Query:  185 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 589
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDP 139          
BLAST of EY702254 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  308 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 586
            +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of EY702254 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  302 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 418
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of EY702254 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  296 KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 574
            KA L   +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of EY702254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH6.489e-5772.55Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL2.733e-4777.10Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU8.515e-4165.93Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.510e-2152.69Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA2.854e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE1.417e-1141.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-G07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702254 ID=EY702254; Name=EY702254; organism=Citrus sinensis; type=EST; length=737bp
CCACGCGTCCGGCCTGTTCTATTTCTTGCAAAAATTTATCATAATCCAGG
AACTCAAAAACTCCATCATCCATCAAGGCATCAACCAGAACACAAAAAAG
AAGGAAAAAGAGGGGGAAAAAAGAAAAATGGCAGCCTCATCCTCCTTGTT
CACACCCTCCACCATCACCGTCCGAAAACACCAAATTTCACCCTCCACCA
TCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAACCTCCCTC
CCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGC
TGAGCTGAGCACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGT
TCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAA
CAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATGT
TCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGCT
TTAACATTGTTGATGTTCTTGCTTGGGGTTCCATTGGCCATATTGTCGCT
TACTACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGG
TTGATTTTGTTATTTGTACTGTCTCTCTTTGTCTCTTTTAGTTTCTTAAT
TTCTCAAGTGTTGCGCTTTGTATAGTTAAATAAATTTCCTAGCATTTAAT
GGATGAGACCGATGATGTAATCTTTGCATTTTTCAAA
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