EY702253

Overview
NameEY702253
Unique NameEY702253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7721 contig Csv1_Contig7721:134..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY702253 vs. ExPASy Swiss-Prot
Match: TTC13_HUMAN (Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 78/288 (27.08%), Postives = 136/288 (47.22%), Query Frame = 3 
Query:    6 VRMETISEPCDPVVWVNKL-SEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADD---IIDLSED-GKLQDIADAKSCDALYKVVGED-FWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEALCNAYCGETYGSTDFNVLENVREAILKMTYYWYNFMPLSRGSXXXXXXXXXXXXXXXNMEFSGHIPQGLQVDWEAILNSDPHFFLDSVKKWLYPSLKTFT-SWKEYPDVTSTFATTGSVXAALSS 848
            V+   I++P  PV+W++++ +   + GF +H  +I GQ   +RY   + + L      +KD+  V++ A++   ++++ E   K+  + D       +    +D F + T   S   +GK+ +G  IT+         F++ T  T  R   + AE+   ++ L  A       S++F   + V   IL + YY+YN MPLSRGS                 E +G IP+G  VD+EA+       F    K W+  +LK+ + S+K  P V+ TF T  S+   L++
Sbjct:  570 VKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHF----IKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDL-TAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKVAKSWM--NLKSISPSYKTLPSVSETFPTLRSMIEVLNT 850
The following BLAST results are available for this feature:
BLAST of EY702253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TTC13_HUMAN7.358e-1927.08Tetratricopeptide repeat protein 13 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702253 ID=EY702253; Name=EY702253; organism=Citrus sinensis; type=EST; length=895bp
CACGCGTCCGAATGGAGACTATCTCTGAACCTTGTGACCCTGTTGTGTGG
GTTAACAAATTAAGTGAAGAATTCAATTCTGGTTTTGGATCTCACACACC
AATGATTCTTGGACAAGCAAAAGTTGTTCGCTACTTCCCAAATTATGCAA
GAACTTTAGATGTTGCAAAGACTGTCATGAAGGATAAAAAGTATGTGCAC
AACAAGGCTGATGACATTATTGATCTATCCGAAGATGGTAAATTGCAAGA
TATTGCGGATGCAAAATCCTGCGATGCTCTTTACAAAGTTGTTGGTGAGG
ACTTCTGGTTGGCTACTTGGTGCAACAGTACTGCATTTGAGGGGAAGCAG
CTTGAAGGGACAAGGATCACCTTAGTCAAAATGGGAGAATCAGGATATGA
CTTTGCAATTAGAACACCTTGTACACCTTCTAGATGGGATGAATTTGATG
CAGAAATGACCATGGCATGGGAAGCTCTATGCAATGCTTATTGTGGTGAA
ACTTATGGGTCTACTGATTTCAATGTTCTTGAAAATGTCAGAGAGGCTAT
CTTAAAGATGACATATTACTGGTACAATTTCATGCCACTGTCTAGAGGCT
CTGCAGTTGTTGGGTTTGTCGTGTTGGTTGGACTGTTCCTTGCTGCTAAT
ATGGAGTTCTCAGGACACATCCCACAAGGTTTACAGGTGGATTGGGAAGC
CATCTTGAACTCTGATCCACACTTCTTCTTAGATTCAGTTAAGAAGTGGT
TGTATCCATCACTTAAGACTTTCACATCTTGGAAAGAGTATCCAGATGTA
ACGTCAACTTTTGCGACAACTGGATCAGTTGNTGCTGCCCTGAGCTCATA
TGACGACTGAACTTTCTACACTCCTTGAGAGATCACCAGATGATA
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