EY702249

Overview
NameEY702249
Unique NameEY702249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702249_ssr67 microsatellite EY702249_ssr67:67..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.406e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  379 GGDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKSPTPCKLARGGHVTAVGVS 747
            GGDSQRS+PTPFLTKTYQL +DP  D+LI+WN DG+TFI+W   +  + LLPKYF    FS +  R     G RK     W+F+NDC ++ EK L  + Q  K S      A      AV  S
Sbjct:   49 GGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFS-SFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAAS 170          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.390e-21
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  346 PVEQTSESPATG-GDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKSP 696
            P    +E+   G G  QR++PTPFLTKTYQL DDP+ DD+I+WN DGSTF++W   +  + LLPKYF    FS +  R     G RK     W+FANDC ++ E+ L       K +P
Sbjct:   26 PPAPAAEAAGVGVGQQQRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFS-SFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTP 142          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.431e-20
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  328 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGL 663
            G +P      T+ + A  G  QRSLPTPFLTKTYQL +DP+ DD+I+WN DGSTF++W   +  + LLPKYF    FS +  R     G RK     W+FANDC ++ EK L
Sbjct:   13 GGEPPPAAVMTAAAEALAG--QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFS-SFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRL 121          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.526e-17
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  388 SQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKSPT 699
            SQRS+PTPFLTKT+ L +D S DD+I+WN DGS+FI+W+  D  K LLPK+F    FS +  R     G +K     W+F+ND  ++ EK L    Q  K + T
Sbjct:   16 SQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFS-SFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTT 118          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.254e-16
Identity = 52/130 (40.00%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  388 SQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKSPTPCKLARGGHVTAVG--VSPAKSTDEL 771
            SQR+ P PFL KTYQL DD + DD+I+WN  G+TF++W   +  K LLPKYF    FS +  R     G RK     W+FAN+  ++ +K L T     ++  T      GG   A G   SP  S D++
Sbjct:    2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFS-SFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLT---AIRRRKTVTSTPAGGKSVAAGASASPDNSGDDI 127          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.810e-15
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  388 SQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTN 672
            +QRS+P PFL+KTYQL DD S DD+++WN +G+ F++W   +  K LLP+YF    FS +  R     G RK     W+FAND  ++  + L T+
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFS-SFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTD 100          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.614e-14
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  361 SESPATGGDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDG-STFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKS 693
            S+  A    +Q+++P PFLTKTYQL DDP+ D +++W  D  STF++W   +  + +LP YF    FS +  R     G RK     W+FAN+  +K EK L T     K S
Sbjct:    8 SDCEAAAAAAQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFS-SFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTS 118          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.614e-14
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  367 SPATGGDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKSPTPCKLA--RGGHVTAVGVS 747
            SPA G         PFLTKTY + +DPS D+ I+WN  G+ F++W   +  + LLPK+F  + FS +  R     G +K     W+FANDC ++ EK L    Q  K S T    A   GG  TA+ +S
Sbjct:    3 SPAAG-------TPPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFS-SFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGAGAAPAGGIPTAIPIS 123          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.934e-14
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  328 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKS 693
            G + +  +E++     T   +  + P PFL+KTYQL DDPS DD+++W  D +TF++W   +  + LLP YF    FS +  R     G RK     W+FAN+  +K  K L +     K S
Sbjct:    9 GGEMVVSMERSHGRSTTTAAAVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFS-SFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSS 129          
BLAST of EY702249 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.297e-13
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  379 GGDSQRSLPTPFLTKTYQLGDDPSADDLIAWNSDGSTFIIWDQRDSHKILLPKYF*KTQFSLTSSRNQTLTGLRKQSRIVWKFANDCSQKREKGLFTNNQPAKKSPTP 702
            G  + + +P PFLTKTYQL DDP  D +++W  D +TF++W   +  + LLP YF    FS +  R     G RK     W+FAN+  +K  K L       K S  P
Sbjct:   24 GAAAGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFS-SFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQPP 130          
The following BLAST results are available for this feature:
BLAST of EY702249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HFB2B_ARATH3.406e-2247.15Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2B_ORYSJ8.390e-2144.92Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2C_ORYSJ1.431e-2048.21Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2A_ARATH2.526e-1746.15Heat stress transcription factor B-2a OS=Arabidops... [more]
HSF24_SOLPE1.254e-1640.00Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH1.810e-1543.16Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB4C_ORYSJ2.614e-1439.29Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB2A_ORYSJ2.614e-1438.76Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFB4D_ORYSJ9.934e-1435.25Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4B_ORYSJ1.297e-1337.96Heat stress transcription factor B-4b OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-G02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702249 ID=EY702249; Name=EY702249; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGCAAAACCTAACCTAACCCAACCCAACACAACACATGCGA
ACTCATCTCTCTCTAGCTCCCTCCCTCCCTCCCTCCCTCGCATGCTCACC
GTTTGAGGTCATCCATCATTTCTGAACCTCCTGGTTTTCAACTTTCAACG
GCGTCTGATCGAGTTCCAACTTTCAACGCTGCACGTTGAACAGTGGTTTA
TTCTTCGCTTGTTAGGTTTGGTGAGAAAATAATCAAAATTCCTCTTCATT
ACCCAACGTACAGATTGAGCGTTAGCAATTAGCAGAAGCGAAGAGAGAGT
TGCAGGATTGATAGGGTTGGGATCTGAGGTATTGACCCGATGGCTCCGGT
TGAGCAGACGAGCGAATCTCCTGCAACAGGAGGAGACTCCCAGAGATCTC
TTCCGACGCCGTTTTTGACCAAAACTTACCAACTGGGTGACGATCCTTCG
GCCGATGATTTAATCGCGTGGAACAGCGACGGATCGACCTTCATAATCTG
GGACCAGCGGGATTCGCACAAGATTTTGTTGCCGAAATATTTTTAAAAAA
CACAATTTTCTCTAACTTCGTCCCGCAATCAAACCCTTACGGGATTAAGA
AAACAATCCCGGATCGTTTGGAAATTTGCAAACGATTGTTCCCAAAAAAG
GGAAAAAGGTCTTTTTACAAACAATCAGCCCGCTAAAAAATCACCAACCC
CCTGCAAATTAGCCAGGGGGGGACATGTGACCGCTGTTGGGGTGTCACCG
GCAAAATCCACCGACGAACTCCCCGGGAGGACAGCGGGAATTTAACCTTA
TTTCTCCCCGGGGAGGGAGCCAAATAAGACCACAGATTAAAGACATCAAT
TTCAAAAAGGAGCCCGAGCCTTAAAAAAAAAAAAAACAGTTGAAAAACAA
AACCCCAAACTCAAAACAGCGAAACCCCTAGAAAC
back to top