EY702247

Overview
NameEY702247
Unique NameEY702247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length982
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702247_ssr719 microsatellite EY702247_ssr719:719..730. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.227e-17
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  221 SKHAVDNPYEIAP----MD*MSTRNTTERKKLGYFSCGTGNPIDDRWRCVGNWHKNRRRAADWYIGF 409
            ++HAV NP E+A     +  MS RN TER+KLGYF+CGTGNPIDD WRC  NWHKNR+R AD  IGF
Sbjct:   41 NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGF 107          
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.773e-16
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  215 TCSKHAVDNPYEIAPMD*MSTRNTTERKKLGYFSCGTGNPIDDRWRCVGNWHKNRRRAADWYIGF 409
            T  +HAV+NP E+A M  MS RN+TER++LGYFSC TGNPIDD WRC   W   R+R AD  IGF
Sbjct:   30 TWHEHAVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGF 94          
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.736e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  221 SKHAVDNPYEIAPMD*MSTRNTTERKKLGYFSCGTGNPIDDRWRCVGNWHKNRRRAADWYIGF 409
            ++HAV NP E+A M  M  +N+TER++LG+FSC TGNPIDD WRC  NWH  R+R A+  IGF
Sbjct:   56 NEHAVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGF 118          
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.366e-15
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  215 TCSKHAVDNPYEIAPMD*MSTRNTTERKKLGYFSCGTGNPIDDRWRCVGNWHKNRRRAADWYIGF*YTPLLA-VMLAFRLSCPNDVDPAN 481
            T  +HAV+NP E+A M  MS RN+T R++LGYFSC TGNPIDD WRC   W   R+  A+  IGF    +       + +S PND +P N
Sbjct:   31 TWHEHAVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVN 120          
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.447e-15
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  224 KHAV-DNPY----EIAPMD*MSTRNTTERKKLGYFSCGTGNPIDDRWRCVGNWHKNRRRAADWYIGF 409
            +HAV D+P     E+A +  MS +N T R+KLG+FSCGTGNPIDD WRC  NWHKNR+R AD  IGF
Sbjct:   82 QHAVADDPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGF 148          
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.270e-14
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  224 KHAVDNPYEIAPMD*MSTRNTTERKKLGYFS-CGTGNPIDDRWRCVGNWHKNRRRAADWYIGF 409
            +HAV +P EIA M  MS RN+T R+KLG+FS C TGNPIDD WRC   WH+ R+R AD  IGF
Sbjct:   34 EHAVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGF 96          
BLAST of EY702247 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.459e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  221 SKHAVDNP----YEIAPMD*MSTRNTTERKKLGYFSCGTGNPIDDRWRCVGNWHKNRRRAADWYIGF 409
            ++HAV +P    +E++ +  MS +N T R+KLG+FSCG GN IDD WRC  NW+KNR+  AD  +GF
Sbjct:   64 NEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGF 130          
The following BLAST results are available for this feature:
BLAST of EY702247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PEL1_ARATH1.227e-1764.18Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL8_ARATH1.773e-1661.54Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH6.736e-1658.73Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH4.366e-1547.78Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL15_ARATH7.447e-1561.19Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH1.270e-1461.90Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH3.459e-1250.75Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-F12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702247 ID=EY702247; Name=EY702247; organism=Citrus sinensis; type=EST; length=982bp
GGGGTGAGAGGGGGGAAAAATTATTTTAAATATTTTTTTTTCCCCNGGNC
NNNCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCGACCCAC
GCGTCCGTCTGGCTTCTGTCCGTAACGAACATCACGTCTCTGGTTCCAGG
AAGATGAACGCGGAGAGCTCAATGAACTCAACAATGGCGGCCAAAGATGA
AATAGTAGCCGAGGACATGTAGTAAACATGCTGTGGATAACCCATATGAA
ATTGCTCCGATGGATTAGATGAGCACCCGCAACACCACTGAAAGGAAAAA
GTTGGGGTACTTCTCCTGTGGTACTGGTAATCCCATTGATGACCGCTGGC
GCTGTGTCGGCAACTGGCACAAGAACCGTAGACGTGCTGCAGACTGGTAC
ATTGGTTTTTGATACACGCCATTGCTGGCCGTGATGCTCGCTTTTAGGTT
GTCCTGTCCCAACGATGTCGACCCTGCTAACCTCAGCCTGGACCTTTACG
TTTGCTTGTTTCCTTGATCCCCTACTCTCCATTCTTATTCCAACGGCCAC
ACCAGTCCCCTTACGACAAGGACCTGCTCCGTACGTAACACTTTTCTCTT
CGTCATTTTTCCCTGCGCGCCCCTCGTACTCCTTACTCTCCCTGAATATC
GAAGTACGTGACCCAGGTCTGAATGGGTTAAACTAGTGGAGTGGCAATAA
TACGCTTTTATCAATTTTTTTATTTATTTATAAGTTTCGCGGTTTTCTTT
TCATTTAATTGTTGCCTTTACCCTTCGCCTCTCGCGCCCGCGACCGCCGC
ACAAAGCGAAAAACCTCTTGTTAGATGCTTGTGAGTGCGCGCCTGATTAC
ATCGGCGCTACTTCCCTCCAGTGACTAGAGAAATCAAAAACCGGCGAAAG
TCCTAATTGGACAACACTTGAGATCGTCAACACATTCGTCCGTGAGAGAC
GGCATGATTCCATCCGCGCCCACCCCGCACCA
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