EY688436

Overview
NameEY688436
Unique NameEY688436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8997 contig Csv1_Contig8997:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY688436 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.460e-30
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:  166 IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQ 405
            + +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATV LMVGT YYYGD PW+
Sbjct:    1 MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQGATVALMVGTGYYYGDNPWK 80
The following BLAST results are available for this feature:
BLAST of EY688436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL3I_ARATH1.460e-3078.75RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688436 ID=EY688436; Name=EY688436; organism=Citrus sinensis; type=EST; length=660bp
CTGCACGCTGTACGGTCGGATTCCCGGGTCGACCACGCGTCCGCCGAAGC
CGAACACGTTTCTTCTTCTGCTGCCTCTTCTTCTTCAGCTCCTCGCGAAA
TTGAACCATTTTTTCTTCGTTTCACAGAACAACATAACCTGCGAACAATC
AAATAAATGGATAAGATAGGTACTGTGGAGCCCACTCTAGAAGATTTTTC
GGAGAAGAAGAAGCGTGTTCGGAACCCTCTTGTTCCCATCGGTGCGCTCA
TGACAGCAGGAGTGCTCACAGCTGGCTTAATTAGTTTCAGGCAAGGCAAT
TCTCATCTGGGTCAGCTCTTAATGAGAGCTAGGGTGGTTGTCCAAGGTGC
TACAGTGGGACTTATGGTTGGCACTGCATACTACTATGGCGATACTCCTT
GGCAATCGAAGTAGAATTTGTTTCTTTTCCCATATATCCTGTATTTCCTA
TAGTGGCTATATCTATCAGGGAGTTCTATATCCTTATCAGTCATGTTTGA
TGTCATCACTGCAACTTTGAGGTAAATTTTTGCATGGTTGCAGCGAATGA
GATTGTACTTGCATACGCAGATTTTTGTGTTTATGCGGAATAAGCATAAA
AGAATTGAGTGCTATCTATCAATCAATATATTGACAGCGAAAAAAAAAAA
AAAAAAGGGC
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