EY702100
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.867e-29 Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 2
Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE KEYP++F+R+IGFDN RQV F
Sbjct: 103 LEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISF 172 HSP 2 Score: 29.6462 bits (65), Expect = 1.867e-29 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query: 564 KLQCISFLAAKPPGV 608
++QCISF+ AKPPGV
Sbjct: 166 QVQCISFIVAKPPGV 180
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.766e-27 Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV KEYP ++VR+IGFDN RQV F
Sbjct: 95 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSF 161 HSP 2 Score: 25.7942 bits (55), Expect = 4.766e-27 Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3
Query: 564 KLQCISFLAAKPPG 605
++QC+SF+A +PPG
Sbjct: 155 QVQCVSFIAFRPPG 168
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.197e-27 Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 2
Query: 362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
W+ L+ KG+V+RE+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E KEYPH+F+RIIGFDN RQV F
Sbjct: 96 WIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISF 172 HSP 2 Score: 24.2534 bits (51), Expect = 6.197e-27 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query: 564 KLQCISFLAAKPPG 605
++QCISF+A KP G
Sbjct: 166 QVQCISFIAYKPTG 179
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 6.205e-27 Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV KEYP ++VR+IGFDN RQV F
Sbjct: 94 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSF 160 HSP 2 Score: 25.7942 bits (55), Expect = 6.205e-27 Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3
Query: 564 KLQCISFLAAKPPG 605
++QC+SF+A +PPG
Sbjct: 154 QVQCVSFIAFRPPG 167
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 8.368e-27 Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV KEYP ++VRIIGFDN RQV F
Sbjct: 33 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSF 99 HSP 2 Score: 26.9498 bits (58), Expect = 8.368e-27 Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3
Query: 564 KLQCISFLAAKPPG 605
++QC+SF+A KPPG
Sbjct: 93 QVQCVSFIAFKPPG 106
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.418e-26 Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 2
Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
L+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E KEYP++F+RIIGFDN RQV F
Sbjct: 2 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISF 71 HSP 2 Score: 25.0238 bits (53), Expect = 1.418e-26 Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query: 564 KLQCISFLAAKPP 602
++QCISF+A KPP
Sbjct: 65 QVQCISFIAYKPP 77
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.780e-26 Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 2
Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
L+ G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E KEYP++F+RIIGFDN RQV F
Sbjct: 101 LEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISF 170 HSP 2 Score: 25.0238 bits (53), Expect = 1.780e-26 Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query: 564 KLQCISFLAAKPP 602
++QCISF+A KPP
Sbjct: 164 QVQCISFIAYKPP 176
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.781e-26 Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2
Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E YP++F+RIIGFDN RQV F
Sbjct: 101 LEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISF 170 HSP 2 Score: 25.0238 bits (53), Expect = 1.781e-26 Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query: 564 KLQCISFLAAKPP 602
++QCISF+A KPP
Sbjct: 164 QVQCISFIAYKPP 176
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.315e-26 Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 2
Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
L+ G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E K YP +F+RIIGFDNKRQV + F
Sbjct: 105 LEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISF 174 HSP 2 Score: 25.0238 bits (53), Expect = 2.315e-26 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query: 564 KLQCISFLAAKPPGV 608
++Q ISF+A KPPGV
Sbjct: 168 QVQIISFIAYKPPGV 182
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.317e-26 Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 2
Query: 377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
++G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E K YP ++VRIIGFDN RQV F
Sbjct: 104 ERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISF 172 HSP 2 Score: 24.2534 bits (51), Expect = 2.317e-26 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query: 564 KLQCISFLAAKPPG 605
++QCISF+A KP G
Sbjct: 166 QVQCISFIAYKPEG 179 The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bpback to top |