EY728914

Overview
NameEY728914
Unique NameEY728914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728914_ssr44 microsatellite EY728914_ssr44:44..53. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728914_ssr354 microsatellite EY728914_ssr354:354..365. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728914 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:   86 DFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSLGDILKSSSLTLW----C*RLHVPASRAGNRSELSRASMFWPCS-QKEERKNCQG 376
            DFSGRRSTRFVSKMHFGR K  M+TRHS  AE+AL +   F+ DD     ++ S    L     C  +       GNR+E  +A  F+  + ++E RKN QG
Sbjct:  135 DFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSDDCTYI---IRELGNRNECDKAVGFYEFAVKRERRKNEQG 233
The following BLAST results are available for this feature:
BLAST of EY728914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP178_ARATH2.475e-1245.10Pentatricopeptide repeat-containing protein At2g31... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-C08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728914 ID=EY728914; Name=EY728914; organism=Citrus sinensis; type=EST; length=794bp
CCACGCGTCCGCCCACGCGTCCGCAAACCCTAAACCTTTCCATTCTCTCT
CTCCACTTCCCTCCTCAAAATCCGAACTTGCTCCTGATTTCTCCGGCCGC
CGGTCCACTCGCTTCGTTTCCAAAATGCACTTCGGGCGCCCCAAAATTGC
TATGAGCACGCGCCACTCGGTAGTAGCTGAAGAAGCACTTCACCACGTCA
CTGCTTTCGCTAGAGATGACGTGTCTCTCGGTGATATTTTGAAAAGTTCG
AGTTTAACTCTGTGGTGCTGACGACTACACGTTCCTGCTTCGAGAGCTGG
AAACCGAAGTGAATTGTCAAGGGCCTCCATGTTTTGGCCTTGCAGTCAAA
AGGAAGAAAGAAAGAATTGTCAAGGGAATTACCAATTGCCGAATCAGCTT
CTTGGGTAAATAANGAAAATTGATCTTGGTAAGAAATTTTCGAAAATTGG
TTAATTGAAGGTTTGGAAACCCGTTTTGGCTTTTCTGGGTTAAATAATGC
TATGGGAAGGATGTGTTTGGCAAAAGGCCAATTTTTTTTATTTTTTTAAA
AATTTCTTTTAAACCCATTTATCCCCTTCAAGCTTTAATTATGCTTTTGG
AAAAGGTTTAAAATTTAACAGTTTGTGGGAATTTGGTGAATTTTTAAAAG
GGGGGCCCCCCCTCGAAAACGTTTTTTTTTGTTGCGCGGGTTTTTAAAAG
GTTTTGGGGGGCGCAGGAATTTTTCTCGAAAAGGTTTTCAAGGGGGGAGC
GGGGAATTCCCCTAAAAACCCCTAAGAGCCNGGGAGGGGGGCCA
back to top