EY736063

Overview
NameEY736063
Unique NameEY736063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736063_ssr324 microsatellite EY736063_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
BLAST of EY736063 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.404e-32
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3
Query:   72 GKDITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 272
            GK ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 27.335 bits (59), Expect = 7.404e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   46 MQIFVKTLTGKT 81
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12          
The following BLAST results are available for this feature:
BLAST of EY736063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_WHEAT7.404e-3298.51Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN7.404e-3298.51Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU7.404e-3298.51Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC7.404e-3298.51Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR7.404e-3298.51Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA7.404e-3298.51Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ7.404e-3298.51Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY7.404e-3298.51Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE7.404e-3298.51Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO7.404e-3298.51Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-E08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736063 ID=EY736063; Name=EY736063; organism=Citrus sinensis; type=EST; length=665bp
CCACGCGTCCGCTGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCA
GATCTTCGTGAAAACCCTAACGGGAAAGACATAACCCTAGAGGTCGAATC
ATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGA
TTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGAC
GGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCT
CGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACA
CCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTC
TTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAA
GGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACT
TTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAG
GCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTA
GTATTAATTACTATGGTTTTTGTGGTTCANAAATTATGACTCTTTCGTAA
TTTTGTNTGACTATATACTTGTNTGCTTGAGCGTTTTAATTAAATGGTTA
TCTGTTTTTAATTCT
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