EY659731

Overview
NameEY659731
Unique NameEY659731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659731_ssr78 microsatellite EY659731_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659731 vs. ExPASy Swiss-Prot
Match: EAPP_MOUSE (E2F-associated phosphoprotein OS=Mus musculus GN=Eapp PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 79/183 (43.17%), Postives = 103/183 (56.28%), Query Frame = 1 
Query:   19 DGQSERE---ILYSPTNSQQTVSDDDEIDYTVKPEFYDPNLDDKDESWVRRERKGR----------------TSDAVLSCPACFTTLCLDCQRHEKYVTQYRAIFVVNCKLGIGQARQITPKGKQGKRKRESSEVV----ADPADGERETI-KPVCCSVCSTEVGVIDEDEVYHFFNVLPSES 495
            D  SE E   +       Q  +  +DE+        YDP  D++D++WV  +R+G                  SDAVL+CPAC TTLCLDCQRHE Y TQYRA+FV+NC   I +   +  K  + +RKR S++ +     DPA+ E E I  PV C+ CSTEV V D+DEV+HFFNVL S S
Sbjct:  108 DSDSEDEDKTVTKKKKKKQHRIPTNDEL-------LYDPEKDNRDQAWVDAKRRGYHAFGLQRPRQKQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNC--SINREEVLRYKNPENRRKRRSAKKMRSNPEDPAEREAEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS 281
[Close]
BLAST of EY659731 vs. ExPASy Swiss-Prot
Match: EAPP_HUMAN (E2F-associated phosphoprotein OS=Homo sapiens GN=EAPP PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 7.935e-30
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 1 
Query:   64 QQTVSDDDEIDYTVKPEFYDPNLDDKDESWVRRERKGR---------------TSDAVLSCPACFTTLCLDCQRHEKYVTQYRAIFVVNCKLGIGQ-----ARQITPKGKQGKRKRESSEVVADPADGERETI-KPVCCSVCSTEVGVIDEDEVYHFFNVLPSES 495
            Q  +  +DE+        YDP  D++D++WV  +R+G                 SDAVL+CPAC TTLCLDCQRHE Y TQYRA+FV+NC +   +     A +   K +  K+ R + E  A+ A+ + E I  PV C+ CSTEV V D+DEV+HFFNVL S S
Sbjct:  128 QHKIPTNDEL-------LYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNQEDAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS 285
The following BLAST results are available for this feature:
BLAST of EY659731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EAPP_MOUSE1.889e-3143.17E2F-associated phosphoprotein OS=Mus musculus GN=E... [more]
EAPP_HUMAN7.935e-3043.64E2F-associated phosphoprotein OS=Homo sapiens GN=E... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659731 ID=EY659731; Name=EY659731; organism=Citrus sinensis; type=EST; length=602bp
CCACGCGTCCGGGAAGGAGATGGCCAATCGGAGCGGGAGATTCTCTACTC
TCCAACCAATTCTCAGCAAACTGTTTCTGATGATGATGAAATAGATTACA
CCGTCAAGCCAGAGTTTTATGATCCAAATCTTGACGATAAAGATGAATCA
TGGGTTCGTAGGGAAAGAAAGGGCCGTACTTCCGATGCTGTGCTCAGCTG
TCCCGCCTGTTTCACCACTCTTTGCCTCGATTGCCAAAGGCATGAAAAGT
ATGTCACCCAGTACAGGGCAATTTTTGTTGTAAACTGTAAGCTTGGAATT
GGCCAAGCACGGCAAATCACTCCAAAGGGAAAACAAGGCAAAAGAAAAAG
GGAATCTAGTGAGGTTGTAGCTGATCCTGCAGATGGAGAAAGGGAAACAA
TAAAGCCAGTCTGCTGCTCTGTTTGCTCAACAGAGGTTGGCGTCATCGAT
GAAGATGAGGTCTATCATTTCTTTAATGTCCTCCCTAGCGAGTCTTGACC
TGCTTGGTCTTAACACTTTTGTACATTANGAATTTTGTGGTTTATGGTTT
ATGTGAGAGTCATGACATCACTGTATCAATAATATACTTCTCTTTCCCTA
TT
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