EY659575

Overview
NameEY659575
Unique NameEY659575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659575_ssr362 microsatellite EY659575_ssr362:362..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:625..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.486e-50
Identity = 96/105 (91.43%), Postives = 99/105 (94.29%), Query Frame = 2
Query:    2 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 316
            PFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.105e-49
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 2
Query:    2 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 316
            PFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  182 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34
Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = 2
Query:    2 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 268
            PFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:  186 PFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 3.384e-23
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    2 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 265
            PFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A
Sbjct:  181 PFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 313
            ++ T++ IE L I + E QR  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  137 NLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 313
            ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K   L++ EIK+ RLA++A +GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  138 TLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-19
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 2
Query:    2 PFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 301
            P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP    +L
Sbjct:  168 PINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            SI  ++  +VL++G +E  R + LD       LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL DP+
Sbjct:  158 SILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            SI ++   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE+ A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  155 SILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
The following BLAST results are available for this feature:
BLAST of EY659575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB4A_ARATH2.486e-5091.43Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.105e-4989.52Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH2.498e-3480.90Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.384e-2362.92Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB121_HORVU1.422e-2153.40Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.502e-2049.51Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH1.019e-1950.50Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_HORVU1.921e-1851.04Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SINAL1.245e-1753.19Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR2.124e-1749.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659575 ID=EY659575; Name=EY659575; organism=Citrus sinensis; type=EST; length=489bp
TCCTTTCTCAATAACAACGTTGATATGGATCGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
TTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCT
CTCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGT
TGGCACTATTGTTATTATTATTATTATATGCGCCTATCTTGTAAAAAGAA
TTATAACATTTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAG
TCATTTCATCTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
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