DR908096

Overview
NameDR908096
Unique NameDR908096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1618 contig Csv1_Contig1618:23..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908096 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.952e-46
Identity = 104/177 (58.76%), Postives = 122/177 (68.93%), Query Frame = 1
Query:  193 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 702
            VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of DR908096 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.620e-44
Identity = 99/171 (57.89%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  190 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 702
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of DR908096 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.859e-41
Identity = 94/171 (54.97%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  190 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 702
            +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   30 EVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of DR908096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU2.952e-4658.76Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH1.620e-4457.89Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH2.859e-4154.97Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16224 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908096 ID=DR908096; Name=DR908096; organism=Citrus sinensis; type=EST; length=726bp
CCATATTGCACATTATTGAAAGAAAATATTGAGAAGCTAATCGCTTTGTC
GTAGTGAGCTGTATACGCGAAGTCTCTGTAGACGATAATGGCAGAGGAGC
AAGTGAAGAAAGTAGAAGCTGAGACGCCAGCGGCCCCAGCTCCAGCTCCA
GCTCTTGCTCCAGCTCCGGCTCCGGCTGTCCCCAACAACGACGTCGCGGA
GGAGAAAGCTGTTACTCAATTACATGATCAAGAGAAGCCTGTTGATGACT
CCAAAGCTCTCGCAGTAGTTGATCAAACTCCAGATTCGGCCAAAAAGAAA
ATTTCTGGGGAAAAGAAAATTTCTGGATCGCATGATAGAGATGTTGCTCT
TGCAGAGGTCGAAAAGGAAAAGAGAGAGTCTTTTATCAAGGCATGGGAAG
AGAGTGAAAAAACAAAAGCAGAGAATAAGGCTCAGAAAAAGCTCTCAGCT
GTTGCTGCATGGGAAAATAGCAAGAAAGCATCTCTAGAAGCCAAACTGAA
AAAGATTGAGGAACAACTGGAGAGGAAGAAGGCAGAGTATGCTGAAAAAA
TGAAAAATAAGGTAGCTCTAGTTCACAAGGAAGCAGAAGAGAAAAGGGCA
ATGGTTGAAGCTAGACGGGGAGAAGACGTTCTTAAGGCTGAGGAGATAGC
TGCAAAATATCGGGCTACTGGGACCACTCCAAAGAAGCTCCTCGGTTGCT
TCTGAAATCAAATTGTTTTTGCAGTG
back to top