DR908095

Overview
NameDR908095
Unique NameDR908095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  101 GDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREHEHHSSDHGT 469
            GDY  G  GLD ++  L     N  G PPA KE + ++P+V + +      L+C VC +D+ +  E +++PC H FHS CI+PWLELH +CPVCR  L  ++   +S+ +  S++++  ++    D  T
Sbjct:  176 GDYAWGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASASNRFSNDSQLHDRWT 303          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  101 GDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREHEHHSSDHGT 469
            GDY  G  GLD ++  L     N  G PPA KE + ++P+V + +      L+C VC +D+ +  + +++PC H FHS CI+PWLELH +CPVCR  L  ++   +++ S  S++++  ++    D  T
Sbjct:  177 GDYAWGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASASNRFSNDSQLHDRWT 304          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   92 GSLGDYFV-GPGLDLLLQHLAENDPN----RYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSS 424
            G+  DY     G + LLQ+LAE D      R G PPA K A+EA+ + ++     E  + C+VC D   +G   K++PC H +H  CI+PWL   +SCPVCR QL  D+ + E ER + +S
Sbjct:  197 GNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRTS 317          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  122 GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 442
            G+D+ L  L   + ++   PPA K+ VE++P V +     +  L+C VCL +FE G   +++PC+H FHS CILPWL   +SCP+CR +LP D  + E  +       Q+EH
Sbjct:   34 GMDIDLGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKERRQQKEH 145          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  104 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 376
            DY  G  GLD ++  L     N  G PPA KE ++A+P+V + E      L+C VC DD+ +G   +++PC H FH  CI+PWLE H SCPVCR  L
Sbjct:  178 DYAWGANGLDAIITQLLNQFENT-GPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  104 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 376
            DY  G  GLD ++  L     N  G PPA KE ++A+P+V + E      L+C VC DD+ +G   +++PC H FH  CI+PWLE H SCPVCR  L
Sbjct:  181 DYAWGANGLDAIITQLLNQFENT-GPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  104 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 376
            DY  G  GLD ++  L     N  G PPA KE ++A+P+V + E      L+C VC +D+ +G   +++PC H FH  CI+PWLE H SCPVCR  L
Sbjct:  180 DYAWGANGLDTIITQLLNQFENT-GPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  122 GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 442
            G+D+ L  +   + ++   PPA K+ VE++P V +     +  L+C VCL +FE G   +++PC+H FHS CILPWL   +SCP+CR +LP D    E  +   +   Q+EH
Sbjct:   34 GMDIDLGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKARRQQKEH 145          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  104 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 376
            DY  G  GLD ++  L     N  G PPA  E ++A+P+++I E      L+C VC +D+ +G   +++PC H FH+ CI+PWLE H +CPVCR  L
Sbjct:  176 DYAWGANGLDTIITQLLNQFENT-GPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  122 GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD-----EFKPESERSRNSSNHQREH 442
            GLD+       +D ++   PPA K  V+++P V I     ++ ++C VCL +FE     +EMPCKH FH+ CILPWL   +SCP+CR +LP D     EFK + ER R     QREH
Sbjct:   34 GLDIDSGSFDLSDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRR-----QREH 145          
The following BLAST results are available for this feature:
BLAST of DR908095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RN115_HUMAN1.789e-1936.43RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN115_MOUSE5.207e-1935.66RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
CIP8_ARATH6.800e-1940.50E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_XENTR3.375e-1839.29E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN126_HUMAN3.375e-1845.36RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN4.408e-1845.36RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN126_MOUSE5.757e-1844.33RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN181_XENLA1.282e-1738.39E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN126_XENTR1.675e-1742.27RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN181_DANRE2.187e-1742.74E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16223 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908095 ID=DR908095; Name=DR908095; organism=Citrus sinensis; type=EST; length=726bp
TGTGATTTTAATCAACCCTTTTAATCAGACTATCATTGTTCAGGGCGGTT
CTTACGATGGTCAACACCAGAATCATAATCATACCCCAATTGGGTCGCTA
GGCGACTACTTTGTTGGTCCTGGTTTGGACTTGTTGTTGCAACATTTGGC
TGAGAATGATCCAAACAGATATGGGACTCCACCAGCACAAAAGGAGGCAG
TTGAAGCAATGCCTAGTGTGAAAATTGAGGAGACTTTGCAGTGTTCTGTG
TGTTTGGATGATTTCGAGATTGGTACTGAAGCAAAGGAAATGCCATGTAA
GCATAAGTTTCATAGTCAGTGTATATTGCCATGGTTGGAGCTTCATAGTT
CTTGTCCAGTTTGTCGGTGTCAATTGCCTGCTGATGAATTCAAGCCTGAG
TCTGAGAGGTCTCGGAACAGCAGTAACCACCAAAGGGAGCATGAGCATCA
TAGTAGCGATCATGGTACTCATGCTAGCAGTGAAGAGGGAGATGGTGAAG
GGAGAAATGAAAGTGGGAGTAGATTTTCAATTCCGTGGCCTTTCAATGGT
CTGTTCTCTTCCTCAAGTTCTCATTCTGGAGGAAACAATTCAACCTCAAC
TTCTCAATCCGGAAGTACTTCTCAAATGAATGAGAATTGAGTATGTTTGC
ATATGATGTTATTAGCTGCTTGTCCTGTATGTTGCTTGAATGATGAGTTG
TCTCTGTACATAGTATCTTACTTGCC
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