DR908089

Overview
NameDR908089
Unique NameDR908089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYGM1_ARATH (Glycyl-tRNA synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 5.656e-106
Identity = 196/242 (80.99%), Postives = 207/242 (85.54%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTSSVTIRERD 727
            EIE SYGWIECVGIADRSAYDL AH++KSG  LVA+EKF+EP+EVEKLVI PVKKELGLAFKG+QKNVV                   SKGEVEFYVCTL K+V IKKNM+ ISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEH F TRPSKAGDEQLN+FRFPPLVAPIKCTVFPLVQNQQ+EEVAKVIS  L   GISHKIDITGTSIGKRYARTDELGVPFAITVDS +SVTIRERD
Sbjct:  445 EIESSYGWIECVGIADRSAYDLRAHSDKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEMKATLESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIRERD 686          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_SCHPO (Putative glycyl-tRNA synthetase OS=Schizosaccharomyces pombe GN=SPAC3F10.03 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 103/246 (41.87%), Postives = 142/246 (57.72%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            EI+CSYGWIECVG ADRSAYDL  H++ +   LV QE   EP  VE+  +   +K+ G  FK   K V                    ++G++   V   G    ++ +++ I K K  EH R +TP+VIEPSFG+GRI+Y L EH+++TRP    D    V  FP  +APIK  + PL +N ++    K +S  L+  GIS+KID +  +IG+RYAR DELG PF +TVD       ++T+RERD
Sbjct:  371 EIQCSYGWIECVGCADRSAYDLSVHSKATKTPLVVQEALPEPVVVEQFEVEVNRKKFGPRFKRDAKAVEEAMISWPESEKVEKSAQLVAEGKI--IVNVNGVEHTVESDLVTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPE---DVNRGVLSFPASIAPIKALIVPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQNETITLRERD 611          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_RAT (Glycyl-tRNA synthetase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.015e-46
Identity = 105/248 (42.34%), Postives = 141/248 (56.85%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERD 727
            E + SYGWIE VG ADRS YDL  H   + V LVA++   EP+ V  +   P K  +G A+K   K V+                    KGE  F + T GK   + K+M+ + + +K  H     PSVIEPSFG+GRI+Y + EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F IT+D      +  + T+R+RD
Sbjct:  346 ESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLGACDECYITEMELLLSEKGE--FTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRD 588          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_MOUSE (Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.015e-46
Identity = 105/248 (42.34%), Postives = 141/248 (56.85%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERD 727
            E + SYGWIE VG ADRS YDL  H   + V LVA++   EP+ V  +   P K  +G A+K   K V+                    KGE  F + T GK   + K+M+ + + +K  H     PSVIEPSFG+GRI+Y + EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F IT+D      +  + T+R+RD
Sbjct:  438 ESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGE--FTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRD 680          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_HUMAN (Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 102/248 (41.13%), Postives = 142/248 (57.26%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERD 727
            E + SYGWIE VG ADRS YDL  H   + V LVA++   EP+ V  +   P K  +G A+K   K V+                    KGE  F + T GK   + K+M+ + + +K  +     P+VIEPSFG+GRI+Y ++EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F +T+D      +  + T+R+RD
Sbjct:  448 ESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGE--FTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRD 690          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_BOMMO (Glycyl-tRNA synthetase OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 102/249 (40.96%), Postives = 141/249 (56.63%), Query Frame = 2
Query:    2 EIEC--SYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD-----STSSVTIRERD 727
            + EC  SYGWIECVG ADRSAYDL  HT+ +G+ L A++K   P+++E +        +G AFK   + +                    S GE  + + T      +  +++ + K +K  H     PSVIEPSFG+GRI+YC+ EH+F  R    GDEQ   F  PP VAP+KC V PL  N +++   + +S  L    +SHK+D +  SIG+RYARTDELGVP+A+TVD        +VT+RERD
Sbjct:  390 DAECLSSYGWIECVGCADRSAYDLTQHTKATGIRLAAEKKLPAPKQIEVVEAIANNGRIGKAFKKDSQAINDTLATLDNAALEEMQKELDSNGE--YTLITARGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMRE---GDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTLRERD 633          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_PONAB (Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.577e-46
Identity = 102/248 (41.13%), Postives = 142/248 (57.26%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERD 727
            E + SYGWIE VG ADRS YDL  H   + V LVA++   EP+ V  +   P K  +G A+K   K V+                    KGE  F + T GK   + K+M+ + + +K  +     P+VIEPSFG+GRI+Y ++EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F +T+D      +  + T+R+RD
Sbjct:  448 ESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGE--FTIETEGKTFQLTKDMVNVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRD 690          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_YEAST (Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisiae GN=GRS1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.264e-45
Identity = 105/246 (42.68%), Postives = 137/246 (55.69%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERD 727
            E++ SYGWIECVG ADRSAYDL  H++K+   LV ++K   P EV K  I   KK  G  F+     V                    + G+    V  +   V +   ++ I +  K EH R + PSVIEPSFGIGRIIY ++EHSF+ RP    D   +V  FPPLVAP K  + PL  ++    V   ++ +L+ + I  KID +G SIGKRYAR DELG PF +T+D  S    SVT+RERD
Sbjct:  378 ELKTSYGWIECVGCADRSAYDLTVHSKKTKEKLVVRQKLDNPIEVTKWEIDLTKKLFGPKFRKDAPKVESHLLNMSQDDLASKAELLKANGKFTIKVDGVDGEVELDDKLVKIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPE---DNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVHHEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERD 620          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_CAEEL (Glycyl-tRNA synthetase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40
Identity = 103/248 (41.53%), Postives = 131/248 (52.82%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS------SVTIRERD 727
            EI  SYGWIECVG ADR+ YDL  H + + V LVA++K  EP +V  +        LG +FK   K +                    +K      V   G+N  +    L I K  KK H +  TPSVIEPS+GIGRI+Y L EHSF  R    GDEQ     F PLVAPIKC+V P+  N     V   +   L    +S+K+D +  +IG+RYARTDE+G+PF ITVD  S      +VTIR  +
Sbjct:  458 EILTSYGWIECVGNADRACYDLQQHYKATNVKLVAEKKLPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSEQVSALEEELLAKKLYNLSVD--GQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQRE---GDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAE 700          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG2_YEAST (Glycyl-tRNA synthetase 2 OS=Saccharomyces cerevisiae GN=GRS2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 96/247 (38.87%), Postives = 134/247 (54.25%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTL-GKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            EI  SYGWIECVG ADR+A+DL  H++K+G +L  ++K   P+E  + V+   KK  G  FK   K +                      GE   + C + G+ V +  +++ I  +   +H R + P+VIEPSFG+GRIIYC+++H F  R      E    F FP  +APIK  V  +  N  +  + K IS  L+   I  KID + TSIGK+YAR DELG PF IT+D       +VT+RER+
Sbjct:  338 EILTSYGWIECVGCADRAAFDLTVHSKKTGRSLTVKQKLDTPKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHEELEKNGE---FTCQVNGQIVKLDSSLVTIKMKTTLQHIREYIPNVIEPSFGLGRIIYCIFDHCFQVR---VDSESRGFFSFPLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTPFGITIDFETIKDQTVTLRERN 578          
The following BLAST results are available for this feature:
BLAST of DR908089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SYGM1_ARATH5.656e-10680.99Glycyl-tRNA synthetase 1, mitochondrial OS=Arabido... [more]
SYG_SCHPO1.565e-4741.87Putative glycyl-tRNA synthetase OS=Schizosaccharom... [more]
SYG_RAT1.015e-4642.34Glycyl-tRNA synthetase (Fragment) OS=Rattus norveg... [more]
SYG_MOUSE1.015e-4642.34Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=... [more]
SYG_HUMAN3.856e-4641.13Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=... [more]
SYG_BOMMO3.856e-4640.96Glycyl-tRNA synthetase OS=Bombyx mori PE=1 SV=2[more]
SYG_PONAB6.577e-4641.13Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=... [more]
SYG_YEAST3.264e-4542.68Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisi... [more]
SYG_CAEEL3.162e-4041.53Glycyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYG2_YEAST7.043e-4038.87Glycyl-tRNA synthetase 2 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16217 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908089 ID=DR908089; Name=DR908089; organism=Citrus sinensis; type=EST; length=729bp
TGAGATTGAGTGTTCGTATGGGTGGATTGAATGTGTCGGCATTGCAGATA
GGTCTGCGTATGACCTGCATGCTCACACGGAGAAGAGTGGTGTCGCGCTT
GTAGCTCAGGAGAAATTTTCAGAACCTAGGGAAGTGGAGAAATTGGTAAT
TGCTCCAGTGAAGAAAGAGCTGGGTCTTGCATTCAAGGGAAGCCAAAAGA
ATGTGGTTGAAGCTTTGGAGGCTATGAATGAGAAAGAAGCTATGGAGATG
AAGGCCGCATTGGAATCGAAAGGGGAGGTGGAGTTTTATGTCTGCACTCT
GGGAAAAAATGTTTGCATTAAGAAGAACATGTTGTTAATTTCTAAGGAGA
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAG
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