DR908075

Overview
NameDR908075
Unique NameDR908075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908075_ssr558 microsatellite DR908075_ssr558:558..569. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908075 vs. ExPASy Swiss-Prot
Match: CCMH_BRAJA (Cytochrome c-type biogenesis protein ccmH OS=Bradyrhizobium japonicum GN=ccmH PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 3 
Query:  141 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALW-LSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLT 557
            A   DE+      + RAR++SR +RC  C +QSI+DS A +A  LR L+R+ I AG ++ +V   L   +GE VL  P+F+ QT  LW L PLL+ G    +W   R R ++   + A       PLTP E+  +  L++
Sbjct:   21 AVQPDEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLDFLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------PPLTPDEEARLAALMS 154
[Close]
BLAST of DR908075 vs. ExPASy Swiss-Prot
Match: CCMH_RHIME (Cytochrome c-type biogenesis protein ccmH OS=Rhizobium meliloti GN=ccmH PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 52/140 (37.14%), Postives = 75/140 (53.57%), Query Frame = 3 
Query:  141 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLL 554
            A N DE+      +ARAR IS  +RC  C +QSI+DS A++A  LR L+R+ ++ G +D+ V   +   +GE VL  P+ + +T  LW  P  LLVAG    + A  R   +          V G PL+ +EKE +  LL
Sbjct:   20 AVNPDEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVISYVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VPGAPLSDEEKERLDRLL 149
The following BLAST results are available for this feature:
BLAST of DR908075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCMH_BRAJA9.819e-1837.14Cytochrome c-type biogenesis protein ccmH OS=Brady... [more]
CCMH_RHIME2.956e-1437.14Cytochrome c-type biogenesis protein ccmH OS=Rhizo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16203 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908075 ID=DR908075; Name=DR908075; organism=Citrus sinensis; type=EST; length=727bp
GAGGAACCAAGCGTTTGTATTAACTATTAAACCCCTACTAAACCTCTATC
ATCATCAAAGCTGATTCAAGTTCCAAGAACAAAGAAGCCTCAGTAGAGCG
TACCAGTTTTTCAGACTAGAGGTGATACACGCTGACAATGGCCAGTAATG
ATGATGAGTTGAAAAAGAAACAAATGGCTGATGCCAGGGCAAGAAACATC
AGTCGAAATGTCCGGTGCACTGACTGTGGGAGTCAATCCATTGAAGATTC
ACAAGCAGATATTGCCATTCTCCTCAGAAAGTTAATTCGTGATGAGATTC
AAGCTGGGAAAACTGATAAAGAGGTTTACAAGAAGCTTGAGGATGATTTT
GGGGAGACAGTACTATATGCCCCGAAGTTTGATCTGCAGACTGCAGCCTT
GTGGCTATCACCGCTTCTCGTTGCAGGTGCTGCCGCAGGAATATGGGCTT
ACAACAGGCACAGGCAAAAGACTAATGTACACATCATGGCTTTGAACCTT
GTTAGAGGTGTACCATTGACCCCGAAAGAAAAGGAAACCATGCTGGACCT
CCTTACACCTCCTCCTCCTCAGCGACCTTCTCCTTCCTCCTGGTGGAGGA
GGTGGCGTGGTCAATGATTAGTTTTCCTACCATTGGTCATATCTTGCTCA
CTTAGTCCAAGAACGATGCAGTGAGAACTGAAAAACCACTTAGCTTATTA
GTATGCAAAGGTCAGAAATTAACTCGT
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