DR406158

Overview
NameDR406158
Unique NameDR406158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406158_ssr17 microsatellite DR406158_ssr17:17..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:114..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDFEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCG 295
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+    S   VVM     E  G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEK---SIMTVVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 40/66 (60.61%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDFEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTC 292
            MSD CGNCDCAD SQCVKKG+S   D VETD        VVM     E+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSY--IEDVVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  104 TCGNCDCADRSQCVKKGSSYAADFVETDFEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCGS 298
            TCGNCDC D+SQCVKKG+SY  D VET+        V++  +  E  G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSY--VDEVIVAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.467e-14
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDFEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTC 292
            MS  C NCDC+D SQC KKG S+    VET+    S   V+M     E  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENR--SMDTVIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.376e-14
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETD---FEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCG 295
            MSD CGNCDCAD+SQCVKKG+SY    VE +   FE  +A          E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVAA---------GEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.376e-14
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETD---FEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCG 295
            MSD CGNCDCAD+SQCVKKG+SY    VE +   FE  +A          E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVAA---------GEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDFEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCG 295
            MS  C NCDCAD +QCVKKG+SY    VET+    S   V +     E  G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENR--SMDTVFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETD---FEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCG 295
            MSD CGNCDCAD+SQCVKKG+SY    V+ +   FE+             E  G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFEM------AEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR406158 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETD---FEL*SAPIVVMXXQXXEAXGNCKCGPTCACVNCTCG 295
            MSD CG+CDCAD+SQCVKKG+SY    V+ +   FE+             E  G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFEM------AEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR406158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.764e-2064.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.709e-1560.61Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC2.915e-1552.31Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV2.467e-1453.03Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ9.376e-1451.43Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI9.376e-1451.43Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO1.599e-1352.24Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3B_ORYSJ5.145e-1247.14Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.955e-1145.71Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248O15 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248O15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406158 ID=DR406158; Name=DR406158; organism=Citrus sinensis; type=EST; length=396bp
GCCGGGGGATCATCACAGCAAAGCAAAGCAAGNNNNGNNNNATAAAGAGC
CCTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCG
GACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAA
GGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTTGAGCTTTAGT
CAGCACCGATTGTTGTCATGGANNNTCAGGNNNCTGAGGCTGANGGTAAC
TGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCA
CTAATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTA
AATATTGTGGGGGTTAAGAATAATGTACGGGTGATTAAAAAAAAAA
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