DR406143

Overview
NameDR406143
Unique NameDR406143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406143_ssr13 microsatellite DR406143_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:117..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTC
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTC 63          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  100 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCSS 291
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C C +
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTC
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTC 64          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKC 60          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKC 60          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNC 63          
BLAST of DR406143 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   91 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C C
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNC 63          
The following BLAST results are available for this feature:
BLAST of DR406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.828e-2369.23Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE4.379e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC1.664e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV1.193e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO5.919e-1658.46Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.249e-1553.85Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.249e-1553.85Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ3.591e-1349.23Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.365e-1247.69Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248N24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248N24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406143 ID=DR406143; Name=DR406143; organism=Citrus sinensis; type=EST; length=389bp
GGGGATCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTC
TATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGACA
CCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGA
AGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCAC
CGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGT
GCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTAGTAGTCACTAATAA
GCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTG
TGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAA
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