DR406136

Overview
NameDR406136
Unique NameDR406136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406136_ssr10 microsatellite DR406136_ssr10:10..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:120..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSDTCGNCDCAD++QCVK+GSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   97 TCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 288
            TCGNCDC D+SQCVK+G+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 282
            MSD CGNCDCAD SQCVK+G+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 282
            MS  C NCDC+D SQC K+G S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MS  C NCDCAD +QCVK+G+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CGNCDCAD+SQCVK+G+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CGNCDCAD+SQCVK+G+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CGNCDCAD+SQCVK+G+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR406136 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKRGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 285
            MSD CG+CDCAD+SQCVK+G+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR406136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.232e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.655e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.162e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.451e-1656.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO5.887e-1657.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.237e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.237e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.094e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI7.956e-1346.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248N14 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248N14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406136 ID=DR406136; Name=DR406136; organism=Citrus sinensis; type=EST; length=570bp
GGGGATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTAT
TTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCT
GCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAGGGGAAGC
AGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGT
TGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCG
GCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCA
AACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGG
GGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACT
TGGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGT
GTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAA
TATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAACGAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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